Search Results for "plink"
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Showing 20 open source projects for "plink"
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Doffen SSH Tunnel
Manage hierarchy of ssh sessions and tunnels
Ssh terminal, file transfer and tunneling tool. The focus is on running tunnels inside tunnels. That one has to jump through several machines. Please see the wiki pages for documentation. https://sourceforge.net/p/doffensshtunnel/wiki/Home/ -
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A tool to estimate trends in recent effective population size trajectories using genome-wide SNP data.
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DuoPutty
DuoPutty is a tool that used to quick connect to multiple UNIX servers
DuoPutty DuoPutty is a tool that used to quick connect to multiple UNIX servers (even cisco devices), you can run commands/scripts on selected remote servers (revoke psftp, plink, putty, ftp, scopy). i.e, sftp files to selected unix server and run command to change owner, took off ctrm for text file. Scopy files to selected server and change mode of files, then run the scripts. (scopy will took of ctrm automatically) ID/password stored locally (AES256 encrypted). Common operations 1.Run any commands or scripts and return result for selected server. 2.... -
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HTTP Proxy Injector
Custom HTTP Proxy Header Injection Application
HTTP Proxy Injector Custom HTTP Proxy Header Injection Application HTTP Proxy Injector is a simple but powerful tool to modify http proxy header requests and respons, to use with SSH or VPN on Windows OS. Access blocked websites behind firewall and many other functions. Free to use for everyone. Want to help HTTP Proxy Injector keep in existence and get better ? Please visit and share our Patreon, Google Sites or Facebook Page :) You can help HTTP Proxy Injector on or using... -
AI-powered service management for IT and enterprise teamsGive your IT, operations, and business teams the ability to deliver exceptional services—without the complexity. Maximize operational efficiency with refreshingly simple, AI-powered Freshservice.
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. ... -
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HTTP Net Header V-4.2
Tunnel Your Connection
What's New? Add Dialler and IP hunter Add menu log plink Add menu Restart Plink and Bitvise Add menu Install and remove Tap adapter Add Tun2Sock Forwarder Add Feature No-Proxy System Add Brazil (portugis) Language Re - new some interface on text Add Start-time Tool duration New System Encrypt Config New System on Load and Save Config ( You can load config without import, just click your config twice or open With this tool) -
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ingap-sf
a genome scaffolder
inGAP-sf is an effective scaffolder to generate high-quality and continuous scaffolds. inGAP-sf achieves this by using a new strategy based on the combination of Dlink and Plink graphs, in which Dlink is used to increase graph connectivity and to decrease graph complexity and Plink is employed to supervise the traversing process on the Dlink graph. Such advantage greatly facilitates the assembly of short-repeat enriched regions. Moreover, a new comprehensive decision model is developed to eliminate the noise routes accompanying with the introduced Dlink. ... -
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SPANDx
Comparative analysis of haploid next-generation genome sequence data
...A presence/absence matrix is also generated to allow you to identify the core/accessory genome content across all your genomes. The outputs generated by SPANDx can be imported into PLINK for microbial genome-wide association study (mGWAS) analyses. SPANDx can utilise PBS, SGE or SLURM for resource management. SPANDx can also run directly on the command line if no resource manager is available. For the most up-to-date version of SPANDx, check us out on GitHub: https://github.com/dsarov/SPANDx -
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Swandle
Swandle is a server handler. It can be used to connect & send commands
...To start, run swandle.bat You will have to download plnk and winscp and put them in script folder. This program is an open source program which uses third party products WinSCP and plink. This program also needs Visual C++ Redistributable. (Normally included in windows new versions.) You just need to put the command and press enter for it to work. -
Fully Managed MySQL, PostgreSQL, and SQL ServerCloud SQL handles your database ops end to end, so you can focus on your app.
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MultiPlink
[UPDATE 28-10-2015] FINAL MULTIPLINK SSH LIFETIME v2.0 UP-5 "FAREWELL"
Download Link Utama: http://sourceforge.net/projects/multiplink/files/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar/download Jika di Halaman Download, Link belum tersedia, klik link alternatif : https://www.dropbox.com/s/znptxp2gxhihpax/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar?dl=0 Lalu Download & Install juga Minor... -
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Athus
Manage, merge, filter and convert population genetics data
...Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO, Illumina call files) * work with genetic maps ... -
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mendelFix
Correction of SNP Mendelian errors in trio data
mendelFix is a Perl script for checking Mendelian errors in genome-wide SNP data of trio designs. The program takes 12-recoded PLINK PED and MAP files as input, and calculates a series of summary statistics for Mendelian errors, sets as missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License. ... -
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ForEachBox is a scripting and automation tool for various Cisco devices. It supports the command line interface of the Cisco Nexus, IOS and ASA series. It is implemented as a Java GUI and requires the Plink tool that is included in PuTTY.
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Windows SSH
SSH for Windows, Based upon Plink
Windows Users, it's time to shut down your VirtualBox's. After trying so many different SSH emulators (Putty/Cygwin etc), I'm releasing a package based upon Simon Tatham's plink. All you need to do is download the package, run install.bat and open a command prompt. Then type in your SSH connection statement as standard. -
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A Linux Terminal Server Client for Windows 2000/XP using the XDMCP and SSH protocol. Its a frontend for Cygwin's Unix on windows and Putty's Plink. Written in Visual Basic 6.
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SSHtt (transparent tunnels) is a simple SSH tunneling management app. The goal is just to provide basic info (internal hostname, ports to be tunneled) and, using plink from putty tools, have the tunnels running transparently and accessed by name.
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Wintunnel is a simple but full featured plink frontend from ALCIDIAN Solutions. It allows creation of SSL tunnels to reach in a secure way all of your TCP services (Webmail, POP Server, SMTP Server and so on...) Support all plink authentication methods
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sixpac
Rapid Genome-Wide Multilocus Association.
...In its present avatar, SIXPAC tests each pair of SNPs for 4 joint-effect models (dom-dom, dom-rec, rec-dom, rec-rec) and outputs statistically significant synergistic effects that predispose an individual to disease. It takes genotype and phenotype information as input, encoded in "raw" and "map" file formats - as defined by Shaun Purcell’s Plink software. It outputs a list of interacting alleles whose combinations are significantly enriched in cases relative to controls (or vice versa). SIXPAC is fast: genome wide scans of large datasets (thousands of samples, typed at ~1M SNPs) can be processed overnight.
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