Search Results for "mri image matlab code"
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Showing 26 open source projects for "mri image matlab code"
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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GeoTools, the Java GIS toolkit
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications. -
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization... -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later... -
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ANDTool
Analysis Nuclei DAB (AND) Tool
... the sample in three regions according to the FastRed channel: a dark-red ROI, a light-pink ROI and a white ROI. ANDTool is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code and standalone versions are here available for download. USER MANUAL: see the specific PDF available in the Files section. REQUIREMENTS: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. MAIN CONTACT: Filippo Piccinini (E-mail: filippo.piccinini85@gmail.com) -
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PRMLT
Matlab code of machine learning algorithms in book PRML
... (for reading image data). The code is extremely compact. Minimizing code length is a major goal. As a result, the core of the algorithms can be easily spotted. Many tricks for speeding up Matlab code are applied (e.g. vectorization, matrix factorization, etc.). Usually, functions in this package are orders faster than Matlab builtin ones (e.g. kmeans). Many tricks for numerical stability are applied, such as computing probability in logrithm domain, square root matrix update to enforce matrix symmetry. -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
... for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging... -
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MATLAB code to identify specific colors of your choice in an image, using MATLAB. Visit letsrobo.wordpress.com for detailed working of the code.
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
...-plane with the maximum intensity value for the different x-y positions previously determined. F-Tracker3D is written in MATLAB (©, The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements: MATLAB 2015a and Image Processing Toolbox 9.2 or later versions. -
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aslm
aslm - a slightly modified asl-module
aslm is an object orientated toolbox written in MATLAB. It was developed for common tasks associated with the analysis of arterial spin labeling (ASL) and other MRI data. Portions of the code rely heavily on (or are copied from) SPM (http://www.fil.ion.ucl.ac.uk/spm), marsbar (http://marsbar.sourceforge.net, Matthew Brett et al.), and GIFT (Group ICA of fMRI Toolbox v.1.3, http://mialab.mrn.org/software/gift/ )which are also released under the GNU public licence. The ASL subtraction-routine... -
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MRI-PDQ:Phase Detection & Quantification
Detect sphere-shaped paramagnetic deposits in MRI datasets
Moved to http://parkermills.github.io/MRI-PDQ/ -
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IBEX_MDA
An open infrastructure software to facilitate radiomics research.
This web page is not guaranteed to have the latest versions. The latest stand-alone version can be downloaded at http://bit.ly/IBEX_MDAnderson The latest source-code version can be downloaded at http://bit.ly/IBEXSrc_MDAnderson IBEX (imaging biomarker explorer) is an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation... -
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ApproxAdderLib
Library of Approximate Adders
... as hardware designers to evaluate their code and design. To the best of our knowledge, this is the first open-source library of approximate adders that facilitates reproducible comparisons and further research and development in this direction across various layers of design abstraction. This work is a result of collaborative effort between Chair for Embedded Systems (CES) at Karlsruhe Institute of Technology (KIT), Germany and Vision Image and Signal Processing (VISpro) Lab at SEECS-NUST, Pakistan. -
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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Facial Expression Recognition
Facial Expression Recognition System - Matlab source code
We propose an algorithm for facial expression recognition which can classify the given image into one of the seven basic facial expression categories (happiness, sadness, fear, surprise, anger, disgust and neutral). PCA is used for dimensionality reduction in input data while retaining those characteristics of the data set that contribute most to its variance, by keeping lower-order principal components and ignoring higher-order ones. Such low-order components contain the "most important... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited... -
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image comparison techniques
Matlab code for binary image comparision
The projects aims at comparing images to find their similarity and to extract matching components -
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LS-PIV Supplemental Material
Line-scanning particle image velocimetry for analyzing blood flow data
Line-scanning particle image velocimetry (LS-PIV) is an analytical method to quantify blood velocity data generated by many confocal and two-photon excited fluorescence microscopes. We hope that this method will be of use to the research community! The associated files include Matlab code for LS-PIV and example data-sets of measured blood flow in the cerebral cortex of mouse. For additional information, please see the manuscript "Line-Scanning Particle Image Velocimetry: an Optical Approach... -
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CIVx is a free advanced PIV (Particle Imaging Velocimetry) code, developped in Fortran and C++. Input : pair of png images. Output : velocity field in NetCDF format. It is used by the UVMAT Matlab code develloped at LEGI.
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Image and video acquisition for scientific applications, particularly in behavioral biology and neuroscience
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A Matlab code to characterize and analyze Gafchromic film for radiotherapy applications. Single or dual color analysis (respectively for EBT or EBT2 film types). Accurate uncertainty estimations. Requirements: Matlab (min. ver. 2007a), Image toolbox.
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