Search Results for "magnetic resonance"

ODIN is a free software framework for rapid prototyping of magnetic resonance imaging (MRI) sequences. The sequences can be tested, simulated and executed on scanner hardware from different manufacturers.

Plastimatch is an open source software for image computation. Our main focus is high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET).

nmrshiftdb2 is a NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. The nmrshiftdb2 software is open source, the data is published under an open content license. The core of nmrshitdb2 are fully assigned spectra with raw data and peak lists (we have pure peak lists as well). Those datasets are peer reviewed by a board...

Insensitive (Incredible Nuclear Spin EvolutioN SImulation Tool Intended for Visual Education) is an application to simulate the NMR experiment based on the quantum mechanical density matrix formalism. It is available for Mac OS X 10.6 and above and iOS 5.1.1 and above. Please refer to the paper published in Concepts In Magnetic Resonance, 2011, 38A (2), 17-24.

Bmrblib is a Python API abstracting the Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/). It allows the writing of NMR-STAR files for BMRB data deposition and the reading and easy extraction of data from files residing in the BMRB data bank, all without knowledge of the Self-Defining Text Archive and Retrieval (STAR) format.

MELAGE is a neuroimaging software developed for visualizing and processing medical images, both Ultrasound and Magnetic Resonance Images (MRIs). Specially it has been prepared for neuroimaging of newborns, it is a versatile platform that allows the visualization of many types of medical images. It allows to load two, three and four-dimensional images of both techniques and in the case of 3D images it allows the simultaneous visualization of the three orthogonal planes which facilitates...

Region-based spatial normalization (RBSN) for functional MRI. He, Hengda, and Qolamreza R. Razlighi. "Landmark‐guided region‐based spatial normalization for functional magnetic resonance imaging." Human Brain Mapping (2022).

Software interface and gateware for magnetic resonance experiments using the limesdr board, as detailed in https://doi.org/10.1063/1.5127746 December 2019: Initial release containing the software used in the publication. In particular, the FPGA gateware, Cpp interface routines and the limr python class. The Cpp interface routines require compilation and the compilation call is found in the files. The FPGA gateware needs to be downloaded to the FPGA using LimeSuiteGUI. At the time...

VMS Draw provides general utilities (e.g. normalization, conversion, and other manipulations of several spectra at the same time) and a flexible graphical user interface (GUI) for an easy use by non-specialists which allows a seamless flow of information between experimentally and theoretically oriented researchers. Finally, it permits effective interactions with other electronic structure codes [e.g., nuclear magnetic resonance (NMR), microwave] even if Gaussian 16 offers the widest set...

Normative myelin water atlas was created by co-registering and averaging myelin images in MNI space from 50 healthy brains to depict the population mean and variability of the myelin content in the brain. The myelin images of individual subjects were acquired using myelin water imaging. Details about myelin water imaging technique and its analysis can be found here: https://mriresearch.med.ubc.ca/news-projects/myelin-water-fraction/. The created myelin water atlas with its standard deviation...

FATCALC-ImageJ is an ImageJ macro (fully automated) for unsupervised fat segmentation in magnetic resonance imaging. It was developed for GE T1 2-points Dixon sequences (fat only image). FATCALC independently evaluates the volumes of visceral adipose tissue (VAT) and subcutaneous adipose tissue (SAT).

Finite Difference Nuclear Magnetic Resonance provides a set of tools for simulating NMR experiments in restricted geometries.

Diffusion tensor magnetic resonance imaging (DTI) is the currently unique in-vivo MRI technique for probing the distribution of neural pathways and micro-structures of biological tissues, thus promising for neurology and neuroanatomy research. However, the 3-Dimensional DTI tractography (DTT) suffers from the overwhelmingly dense resulting fiber tracts in its visualizations which substantially impedes effective exploration, tracts-of-interest (TOI) selection, for example, in the practical...

GSim - free software tool for visualisation and processing of experimental and simulated nuclear magnetic resonance (NMR) spectra.

A flexible tool for medical research in magnetic resonance imaging (MRI) to generate parametric images (maps) from multiple types of pulse sequences (IR-prepared, Look-Locker, and MOLLI T1 mapping; single- and multi-echo T2/ T2* mapping).

The neuroimaging in python (NIPY) project is an environment for the analysis of structural and functional neuroimaging data. It currently has a full system for general linear modeling of functional magnetic resonance imaging (fMRI).

Burrow-owl is a software package for visualizing multidimensional nuclear magnetic resonance (NMR) spectra, with an emphasis on spectra used in macromolecular structure determination.

DArmstadt MAgnetic Resonance Instrument Software

An evaluation framework for assessing contours generated by segmentation algorithms acting on cardiac magnetic resonance (MR) images. These contours are important for clinical assessment of left ventricular volume and mass.

Vurtigo is a 4D (3D + time) real-time visualization software for guiding cardiovascular interventions. It is primarily intended for use with a magnetic resonance imaging (MRI) scanner, and also actively tracked catheters and navigational devices. The latest releases are not available on sourceforge; check out the vurtigo.ca link below for the most up-to-date version.

NMRShiftDB is an open-source, open-access, open-submission, open-content web database for chemical structures and their nuclear magnetic resonance data.

Nuclear Magnetic Resonance Relaxation

This project contains pulse sequences developed at the Nuclear Magnetic Resonance Facility at Madison to perform multidimensional NMR experiments on Varian spectrometers. Users include researchers in the field of structural biology.

There is the toolbox of implementing a mehod for consistent group indepent component analysis for functional magnetic resonance imaging.

BrainFX, a customization of GenericFX for the field for functional Magnetic Resonance Imaging (fMRI). It defines java classes, data hierarchy and data standard for the field of fMRI.