An interactive viewer for three-dimensional chemical structures.
PyMOL is an OpenGL based molecular visualization system
Cavity Detection PyMOL plugin
Analyze and visualize coupled residues and their networks in proteins
analysis of interaction networks in structural ensembles of proteins
SW for HTP analysis of 3D trajectories of microorganisms
PreDyJE is a python tool to calculate dehydrons in a protein.
Simple Molecular Interaction Potential Generator in Python