Search Results for "hmm software"
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Showing 16 open source projects for "hmm software"
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1
statsmodels
Statsmodels, statistical modeling and econometrics in Python
... of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. Vector error correction model, VECM. Robust linear models with support for several M-estimators. statsmodels supports specifying models using R-style formulas and pandas DataFrames. -
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gse
Go efficient multilingual NLP and text segmentation
Go efficient multilingual NLP and text segmentation; support English, Chinese, Japanese and others. Gse is implements jieba by golang, and try add NLP support and more feature. Support common, search engine, full mode, precise mode and HMM mode multiple word segmentation modes. Support user and embed dictionary, Part-of-speech/POS tagging, analyze segment info, stop and trim words. Support multilingual: English, Chinese, Japanese and others. Support Traditional Chinese. Support HMM cut text use... -
3
Extract 16S rRNA from genomes
This script extracts 16S rRNA sequences from multifasta files
... path (if not in system path modify the path at lines 21,72 (for nhmmer),51,100 (for samtools) of the script by adding the path to your nhmmer executable). The HMM files arc.ssu.rnammer.hmm and bac.ssu.rnammer.hmm have to be in the same software were executable file is saved. Inside the folder creates two sub-folders named "bacteria" and "archaea" where you will save your multifasta files (multifasta of bacteria in one and of archaea in the other one). MORE DETAILS IN THE FILE INCLUDED... -
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GENSENG
GENSENG is a software detecting CNVs from NGS data
GENSENG is a software detecting CNVs(Copy Number Variations) from NGS(Next Generation Sequencing) data. We have uploaded the data preparation codes. Please download it from Files folder. -
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hts_engine is software to synthesize speech waveform from HMMs trained by the HMM-based speech synthesis system (HTS). This software is released under the Modified BSD license.
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PALM
Probabilistic natural mapping for gene based association study.
PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test. -
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I think cutest is a very cool test framework for embedded C. Well, mostly because it is simple, just two files, OK, I admit I am lazy, that is why I use it. Hmm, still cutest is not perfect, so I just use it for personal purpose and I will also fix some issues which I think is valuable and put it here. Just for personal purpose.
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8
Sinsy
HMM-based singing voice synthesis system
Sinsy is an HMM-based singing voice synthesis system. This software is released under the Modified BSD license. -
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High-order HMM in Matlab
Implementation of duration high-order hidden Markov model in Matlab.
Implementation of duration high-order hidden Markov model (DHO-HMM) in Matlab with application in speech recognition. -
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Parallel GENSENG is a parallel implementation of the GENSENG software for detecting copy number variations from high-throughput sequencing data. This software runs exactly as the original code does, except that it utilizes multiple threads where possible. OpenMP was used for multi-threading so changes to the original code were minimal. For a demo, please download the sample data linked to below and follow the README from the tarball. Example read count data: http://www.cs.unc.edu...
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11
HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp... -
12
Smart Autorun Cleaner
Smart Autorun Cleaner, Most powerful gadget against autorun-malwares.
Smart Autorun Cleaner, Most powerful gadget against autorun-malwares. You can use 500 minutes free trial full function before purchase, don't worry when you use software, your time will be deducted. With this great gadget you can restore your hidden files (Hidden files duo to viruses) automatically in moments and absolutely clean your disks(memory disks and...) as easy as plug your memory disks in usb drives and remove them after seconds, this can be great hmm? Please carefully read help... -
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LibNebular is C++ Linux library for uniform image file manipulation as String key-value pairs (with sometimes BLOB values) where different file types are intruduced through DL (".so") libraries. Includes BMP and JPEG plugins. Can easily be ported.
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HmmSDK is a hidden Markov model (HMM) software development kit written in Java. It consists of core library of HMM functions (Forward-backward, Viterbi, and Baum-Welch algorithms) and toolkits for application development.
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dinrhiw2 (copy of main repo from github)
Dinrhiw2 - machine learning library and tools (neural networks) in C++
Machine learning C++ library. Linear algebra (PCA), splines hermite curve interpolation, neural networks (feedforward, recurrent, RBM, bayesian), Hidden markov model (HMM), Hamiltonian Monte Carlo sampling for neural networks etc. Uses BLAS (OpenBLAS, Intel MKL) to speed up linear algebra. Software is developed by Tomas Ukkonen. -
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This is a project to create a compiler that converts grammars written in SRGS standard (http://www.w3.org/TR/speech-grammar/) to a graph understandable by HMM based ASR engines. Check srgs-parser.sf.net
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