Search Results for "curation"
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Showing 40 open source projects for "curation"
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NeMo Curator
Scalable data pre processing and curation toolkit for LLMs
NeMo Curator is a Python library specifically designed for fast and scalable dataset preparation and curation for large language model (LLM) use-cases such as foundation model pretraining, domain-adaptive pretraining (DAPT), supervised fine-tuning (SFT) and paramter-efficient fine-tuning (PEFT). It greatly accelerates data curation by leveraging GPUs with Dask and RAPIDS, resulting in significant time savings. The library provides a customizable and modular interface, simplifying pipeline... -
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Argilla
The open-source data curation platform for LLMs
Argilla is a production-ready framework for building and improving datasets for NLP projects. Deploy your own Argilla Server on Spaces with a few clicks. Use embeddings to find the most similar records with the UI. This feature uses vector search combined with traditional search (keyword and filter based). Argilla is free, open-source, and 100% compatible with major NLP libraries (Hugging Face transformers, spaCy, Stanford Stanza, Flair, etc.). In fact, you can use and combine your preferred... -
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tStudio3D is published here on SourceForge.net as part of an effort to curate it as an old-school game development platform -- as a museum artifact. This curation work is being done so that young enthusiasts can explore a sampling of the early tools in 3D game development from the late 1990s and early 2000s. In support of this curation effort, tStudio3D has been freshly rebuilt to run on Windows 11 using Microsoft Visual Studio 2022 (as of April 2023). No future development is planned...
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modnlp
Modular Suite of NLP Tools
..., curation and distributed access tools. If you use the tool please consider referencing it using the following article: Luz, S., & Sheehan, S. (2020). Methods and visualization tools for the analysis of medical, political and scientific concepts in Genealogies of Knowledge. Palgrave Communications, 6(1), 1-20. https://www.nature.com/articles/s41599-020-0423-6 -
Calmerry is beneficial for businesses of all sizes, particularly those in high-stress industries, organizations with remote teams, and HR departments seeking to improve employee well-being and productivity
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RSS Aggregator Plugin
Import, merge, display feeds. Aggregate, categorize, filter sources
Transform your WordPress site with the CM RSS Aggregator plugin, a powerful tool designed to seamlessly import, merge, and showcase RSS and Atom feed snippets. This plugin enables easy compilation and organization of multiple feed snippets into categorized lists, enhanced by keyword filters for precise content curation. Each snippet is enriched with source details and links to full articles, providing users with a comprehensive and connected browsing experience. -
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gpt-2-simple
Python package to easily retrain OpenAI's GPT-2 text-generating model
A simple Python package that wraps existing model fine-tuning and generation scripts for OpenAI's GPT-2 text generation model (specifically the "small" 124M and "medium" 355M hyperparameter versions). Additionally, this package allows easier generation of text, generating to a file for easy curation, allowing for prefixes to force the text to start with a given phrase. For finetuning, it is strongly recommended to use a GPU, although you can generate using a CPU (albeit much more slowly... -
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OpenSourceMetaverse Editor
a simple virtual world editor
... in virtual environment) Access the selected item to expand (e.g. Map/3D: Click on the "Statue of Liberty" reference) Build own virtual world by personalised customisation to the settings in the text box. Share it with others. Ideal for: running virtual exhibition event; showcasing items on display like in a museum of collectible art for curation; list favourite places to visit, shop and dine; constructing, playing, sharing virtual worlds one can imagine. -
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CODON SOFTWARE
The dataset and codon project files are available here.
Genome annotation conceptually consists of inferring and assigning biological information to gene products. Over the years, numerous pipelines and computational tools have been developed aiming to automate this task and assist researchers in gaining knowledge about target genes of study. However, even with these technological advances, manual annotation or manual curation is necessary. To assist with this problem, we present CODON, a tool for the prediction, annotation, and manual curation... -
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BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. Models presented are annotated and linked to relevant data resources and are available in various format
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We design our technology to make workforce management easier. APS offers core HR, payroll, benefits administration, attendance, recruiting, employee onboarding, and more.
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@Note2
@Note2 - A workbench for Biomedical Text Mining
Biomedical Text Mining (BioTM) is providing valuable approaches to the automated curation of scientific literature. -
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ImproveAssembly
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206
The availability of biological information in public databases has increased exponentially. To ensure the accuracy of this information, researchers have adopted several methods and refinements to avoid the dissemination of incorrect information. However, manual curation ensures and enriches biological information. Additionally, the genomic finishing process is complex, resulting in increased deposition of drafts genomes. This introduces bias in other omics analyses because incomplete genomic... -
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GapBlaster
Semiautomated gap closing tool
GapBlaster is a software that aims at providing a simple graphical user interface for closing genome gaps. It allows the curation of the gaps that will be closed, thus improving the quality of draft genomes. User Guide: https://sourceforge.net/projects/gapblaster2015/files/GapBlaster_manual_v2.pdf/ -
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ConsPred
ConsPred is a pipeline combining several gene/CDS annotation tools
ConsPred is a prokaryotic genome annotation framework that performs various intrinsic gene predictions, homology searches, predictions of non-coding genes, and complex features and integrates all evidence into a consensus annotation. ConsPred achieves high-quality and comprehensive annotations based on rules and priorities, similar to decision making in manual curation. Parameters controlling the annotation process are configurable by the user and the framework can be easily extended... -
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GapBlaster
Semiautomated gap closing tool
GapBlaster is a software that aims at providing a simple graphical user interface for closing genome gaps. It allows the curation of the gaps that will be closed, thus improving the quality of draft genomes. User Guide: https://sourceforge.net/projects/gapblaster/files/User_Guide/ -
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The ‘ISA commons’ is a growing, exemplar ecosystem of data curation and sharing solutions built on a common, metadata-focused framework, providing tools and resources to create and manage large, heterogeneous data sets in a coherent manner.
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panMetaDocs is an application based on panMetaworks and eSciDoc to collect and mananage digital objects in a scientific research environment.
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This project supports the tracking and monitoring of curator and user data, service and software requests to support the long term analysis, annotation and curation of the fission yeast (Schizosaccharomyces pombe) genome
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Tellervo
Dendrochronological sample measurement, curation and analysis program
Tellervo enables users to measure, curate and analyse dendrochronological samples. It has a server/client architecture enabling users to collaborate within and between laboratories. -
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Automatic cell lineage reconstruction
Automatic segmentation and tracking for 3D time-lapse microscopy
... of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. Our approach achieves on average 97.0% linkage accuracy across all species and imaging modalities." *Please cite this paper if you use this code for your research -
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WP Embed Articles
Embed and share articles or posts from your wordpress blog
Enables your wordpress blog posts to be sharable through an embedded interface as a service by http://embedarticles.com Embed Articles is a viral content distribution plugin that enables your posts and articles to be embedable to other websites through a creative embed button interface. By installing this plugin into your blog, your blog will be automatically be added with proper Open Graph Protocol metadatas which are being respected and parsed by most search engines like Google, Bing,... -
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A protein alignment curation tool using Local Covariation from "Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment Errors" by Dickson et al. published in PLoS ONE on June 8, 2012.
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DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
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XMC Cat
XMC Cat is an adaptable metadata catalog for e-Science
XMC Cat is an open source web service written in Java that utilizes the Axis2 web service engine and Apache Tomcat. Its features include adaptability to domain schemata through configuration instead of code changes, support for automatic capture of metadata through the use of curation plugins, and search and browse capabilities through a web-based GUI that is dynamically generated from a domain schema. This allows XMC Cat to be deployed in different scientific and educational domains without... -
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The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. !!!! Important Announcement !!!! We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired. Please use the Git-Hub issue...
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RŌNIN-LINUX
Linux Security Distro for Data Forensics, Pen. Testing, and IR.
RŌNIN is a linux security distribution (based on Lubuntu) that provides a platform for both training and conducting professional data forensics, penetration testing, and incident response. The primary objective of RŌNIN is to provide a fast/light linux desktop along with a curation of security tools and resources that are relevant for professionals, instructors, and students alike. In support of this objective, the RŌNIN project is guided by two main goals: * Focus on Continual...