Search Results for "cufflinks-2.0.2"
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Showing 31 open source projects for "cufflinks-2.0.2"
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Our Free Plans just got better! | Auth0 by OktaYou asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your secuirty. Auth0 now, thank yourself later.
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Bright Data - All in One Platform for Proxies and Web ScrapingBright Data offers the highest quality proxies with automated session management, IP rotation, and advanced web unlocking technology. Enjoy reliable, fast performance with easy integration, a user-friendly dashboard, and enterprise-grade scaling. Powered by ethically-sourced residential IPs for seamless web scraping.
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Pencil
The Pencil Project's unique mission is to build a free tool
Pencil is built for the purpose of providing a free and open-source GUI prototyping tool that people can easily install and use to create mockups in popular desktop platforms. The latest stable version of Pencil is 3.1.0 which contains stability fixes and many new features. More details can befound in the releaste notes. Pencil provides various built-in shapes collection for drawing different types of user interface ranging from desktop to mobile platforms. Starting from 2.0.2, Pencil... -
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DataQualityDashboard
A tool to help improve data quality standards in data science
The goal of the Data Quality Dashboard (DQD) project is to design and develop an open-source tool to expose and evaluate observational data quality. This package will run a series of data quality checks against an OMOP CDM instance (currently supports v5.4, v5.3 and v5.2). It systematically runs the checks, evaluates the checks against some pre-specified threshold, and then communicates what was done in a transparent and easily understandable way. The quality checks were organized according... -
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WinDjView Extended
WinDjView Extended is a DjVu viewer WinDjView with some extra features
WinDjView is a fast, compact and powerful DjVu viewer for Windows with tabbed interface, continuous scrolling and advanced printing options, based on free DjVuLibre library. WinDjView Extended is a WinDjView 2.0.2 with some extra features. Interface languages: english, russian. Supports Windows versions: XP or later. -
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linuxhub-prime
v2.0.2
LinuxHub Prime has migrated to version 2.0.2 - Updated Archinstall to v2.8.2 Openbox, Budgie, Cinnamon, Deepin, Gnome, Mate, Plasma6 and XFCE Awesome BSPWM Hyprland QTile *************** all built into a single ISO. It can be used as a stand alone system or it can be used to build a custom respin with personalized settings. I have been working on this one for a solid month or so and kept at it working out all of the bugs and little details. The installer is the same. Whatever... -
Precoro helps companies spend smarterFor minor company expenses, you might utilize a spend management solution or track everything in spreadsheets. For everything more, you'll need Precoro. We help companies achieve procurement excellence and budget efficiency by building transparent, predictable, automated spending workflows.
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rna-test
script for variant calling of RNA-Seq
rna_test.sh is a shell script to run GATK best practice for variant-calling in RNAseq. It uses STAR2.5 for alignment, HaplotypeCaller to call variants, and Annovar to annotate. It also employs STAR-Fusion, Cufflinks and Stringtie FPKM, HTSeq_count and BAM-readcount. Notice: STAR_gene_read and HTSeq_count are added. exac03nontcga is added. STAR-Fusion is added. Stringtie is added. Disable BQSR (-skb) opteion is added. New avsnp(150) is updated. use -dcov in SplitNCigarReads added... -
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Foobar2000 WASAP2 & ASIO2 output
An alternative to the official wasapi & Asio foobar2000 outputs
An alternative to the official wasapi and Asio foobar2000 output component: WASAPI output Support 3.2.3 ASIO output Support 2.1.2 with a special effort to improve audio quality Changes in 2.0.2: fix crash at playback startup when asio driver version < 2. Changes in 2.0.1: sound problems with lossy codecs:WMA, MP3 used with gapless convolver, fixed Changes in 2.0: more stable version: tested with more codecs, 24 bits asio works now. version optimized... -
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Crispy Synced Notes
A note taking program with WebDAV sync
... synchronization - allows to encrypt your files locally and remote using AES256 - multi language support You can obtain the full source code at: https://crispy-cow.de/git/CrispySyncNote.git Latest changes: 2.1.0: Updated for Java 9 and up 2.0.2: Added more UI translation, updated greek language (thanks to geogeo) 2.0.1: Bugfix: Sync state is now copied when duplicating workspace due to change in encryption settings -
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DISSCO-2.0.2
Computer music on HPC
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CUPS back-end for the canon printers using the proprietary USB over IP BJNP protocol. This back-end allows Cups to print over the network to a Canon printer. The design is based on reverse engineering of the protocol. Version 2.0 adds ink-level reporting and improved out-of-paper detection. Version 2.0.1 is now released under GPLv2 or later to be compatible with the changed cups license. No other changes. Version 2.0.2 fixes a compile error with GCC9 Version 2.0.3 Fix GCC10 compile...
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Global anycast DNS network. | IBM NS1 ConnectIBM NS1 Connect provides fast, secure connections to users anywhere in the world with premium DNS and advanced, customizable traffic steering. NS1 Connect’s always-on, API-first architecture enables your IT teams to more efficiently monitor networks, deploy changes and conduct routine maintenance.
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Mass Effect 3 Mod Manager
ME3CMM is a mod manager for Mass Effect 3.
Mass Effect 3 Mod Manager is no longer maintained on SourceForge. You can download and follow development at the official site at https://me3tweaks.com/modmanager. Builds from GitHub are synced here so users can fetch the latest copy if they stumble upon this page. The code in the repository is from 2.0.2 and will not be updated on sourceforge anymore. -
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Rapid JSF web development with single backing bean per page and straightforward clean navigation. March 20, 2015: Version 2.0.2 released tested on Tomcat, JBoss, and Weblogic. Simple Tomcat example code included to be built with Ant. Asterion for JSF is a library for JSF web applications that provides the execution of managed-bean's methods when each page is being entered, displayed and left. The methods navigateIn(), preRender() and navigateOut() are automatically executed.
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration... -
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The Virtual Library is an experiment in peer-to-peer book sharing. Web-based system generates email requests, status updates and keeps track of book locations. Built using Struts/Tiles 1.3.5, the Springframework 2.0.2 and other Apache components.
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OPRoS Distribution Package 2.0.2
OPRoS Execution Engine and IDE prior to 2014 (Abalone1.0, Abalone1.2)
Open Platform for Robotic Services (OPRoS) is a robot software platform including IDE and simulator. It works in Windows, Linux, and experimentally it was tested in Android, iOS, Embedded Windows, Embedded Linux, QNX, Xenomai. These distribution packages have OPRoS Execution Engines and eclipsed based IDE including example components prior to 2014. *Prerequisite Programs: Oracle JAVA SDK 6.0 above, VS 2008/2010 redistribution packages (for Window users) * Prior to 2012: tested in... -
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pngnq-s9
A modified pngnq: convert png images to 256 colours.
... weight to specific colour components when quantizing. The program also includes a few bug fixes relative to the most recent version of pngnq. The .tar.gz files have been known to compile on Unix type systems, including Cygwin. The only external dependencies are libpng and zlib. For Windows users, we have a 32 bit binary, in pngnq-s9-2.0.2.zip, that should run as is on most modern Windows machines. -
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Tic Tac Toe
Exciting Tic Tac Toe game full of features
Hello World, my name's Nick . I like this game since a long time. I played various versions of it, but they all lack in customization. That always made me want to make my own version of Tic Tac Toe since I was 10 or so. I couldn't even program! So I'm now attempting to make it look beautiful and full of little details. I hope you're gonna enjoy it! Coder: Nick . Tester: Alex You need Microsoft .Net Framework 4.5 or the application won't start. .Net Framework 4.5 is already... -
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
...(>=1.53.0), google sparse hash(>=2.0.2), GCC(>=4.6), autoconf(=2.69), and automake(=1.13). -
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PlayAuthenticate
An authentication plugin for Play Framework 2.x (Java)
Fully customizable and localizable controllers and views (e.g. Play Authenticate allows you to define your own controllers and views for every visual step of the signup and/or log in process). Completely dynamic URL generation for all views (uses the route file - means you can adapt the look and feel as much as you like). The sample shows how to do this with Twitter bootstrap. Linking of accounts (e.g. one local user with multiple authentication providers). Linking can be done automatically... -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
.... The first homepage tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client. Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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pysnmpfs
Monitor SNMP hosts with a sysfs-like filesystem in user-space
pysnmpfs is an extensible user-space filesystem engine written in Python to provide access to SNMP data in the same fashion as sysfs or procfs. The engine automatically caches data from SNMP agents and updates files as they are read. It relies upon extensions and defines a self-registered plugin API for fetching SNMP data. The project is based upon pysnmp-4.2.5+ and fusepy-2.0.2+ by Terrence Honles. -
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Geoportal Server is a standards-based, open source product that enables discovery and use of geospatial resources including data and services.
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CollapseFPKM
This code is a solution to collapsing duplicate FPKMs for a gene
This code is a solution to collapsing duplicate FPKMs for a gene. Problem/Issue: In the cufflinks output files *_genes.expr (which reports the gene-level coordinates and expression values), sometimes I get more than one row for the same gene? It's like in some cases the FPKM values from the transcripts corresponding to the same gene do not get summed, although the transcripts are assigned to the same gene. Reasons and Solution: The multiple FPKM problem occurs when genes have... -
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Platinum Info-Student
It's database based student information system
Platinum Info-Student is a WINDOWS platform dependent student information system based on .net. It can allow you to save , search , delete , update the information of students in the smartest way . Version: 2.0.2 (Released at 31-Mar-2014) Recommendations: ♦ You must have the Microsoft dotnetframework 3.5 installed in your system. ♦ You must have Microsoft SQL SERVER 2005/2008/2012 installed in your system in SQL AUTHENTICATION MODE and database user name , password have... -
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
The purpose of DressUp is to create an end-to-end RNA seq pipeline in which all of the steps of analyzing data from an Illumina sequencer is done in one step in an HPC environment. RNA seq programs included are TopHat, CuffLinks, CuffDiff, CuffMerge, FastQC, and trimming using the FastX toolkit. DressUp facilitates RNA seq programs by streamlining various packages into a single script. That script executes the RNA seq programs on a batch cluster system. Upon execution of the script, jobs... -
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Siscontrole Loja Virtual
Migra os dados de sua loja antiga para a nova versão do Virtuemart
Se você tem a necessidade de migrar sua loja virtual Virtuemart 1.1.9 para 2.0.2 utilize o programa VM Migrador PRO 1.0.0 Beta, não possui limitação de uso e não expira. Ele criar separadamente e também em um único arquivo os scripts para sejam executados na sua nova loja, ideal para desenvolvedores de lojas virtuais. If you have a need to migrate your virtual store Virtuemart 1.1.9 to 2.0.2 using the program PRO VM Migrator 1.0.0 Beta, has no limitation of use and do not expire. He...