Search Results for "calcium analysis matlab gui"
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Showing 34 open source projects for "calcium analysis matlab gui"
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Gait Analysis Graphical User Interface
Extracts gait parameters from 120 fps video of mouse walking
This project enables behavioral scoring of mouse gait using MATLAB. This was developed and used in the laboratory of Veronique VanderHorst, MD PhD at Beth Israel Deaconess/Harvard Medical School. First, a GUI displays videos of mice walking on a custom apparatus and enables the user to manually detect paw position. This data is saved. Additional functions take this spatiotemporal information and extract commonly used gait parameters, which are then exported to a MATLAB structure to be used... -
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FEATool Multiphysics MATLAB FEM Toolbox
FEATool Multiphysics is an easy to use MATLAB FEM Simulation Toolbox
FEATool Multiphysics (https://www.featool.com) is a fully integrated, flexible and easy to use physics and finite element FEM simulation toolbox for MATLAB. Developed with ease of use in mind, everyone is able to set up and perform complex multiphysics simulations in a simple GUI without learning any coding, programming, or scripting. In addition to built-in FEM and PDE solvers, FEATool features full integration with the high performance OpenFOAM CFD and FEniCS PDE solvers. With built-in CAD... -
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asammdf
Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)
*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4 -
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SpectraViever
GUI app to view Veritas, MAX IV data
Data visualization, generate metadata log files, save spectra in .txt format for further advanced analysis. -
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SMTracker (v1.5, v2.0)
A tool for analysis and visualization of single-molecule tracking data
SMTracker v2.0 is a MATLAB-based graphical user interface (GUI) for automatically quantifying, visualising and managing SMT data via five interactive panels, allowing the user to interactively explore tracking data from several conditions, movies and cells on a track-by- track basis. Diffusion parameters and motion behaviour is analysed by several methods: a) by a Gaussian mixture model ,or b) by using the cumulative probability distribution of square displacements, c) Mean-Squared displacement... -
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing... -
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LIPRAS, Line-Profile Analysis Software
Peak fitting GUI for diffraction data
LIPRAS v466 LIPRAS [LEEP-ruhs], short for Line-Profile Analysis Software, is a graphical user interface for least-squares fitting of Bragg peaks in powder diffraction data. For any region of the inputted data, user can choose which profile functions to apply to the fit, constrain profile functions, and view the resulting fit in terms of the profile functions chosen. If you use LIPRAS for your research, please cite it: Giovanni Esteves, Klarissa Ramos, Chris M. Fancher, and Jacob L. Jones... -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented... -
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VeriSiMPL
Verification via biSimulations of Max-Plus-Linear models
... are to be expressed in the C++ language. The abstraction procedure runs in C++. The generated LTS is exported to the NuSMV language. As such, it can be fed, along with a specification of interest, to the NuSMV model checker. If you are more familiar with JAVA language, we suggest you to try VeriSiMPL version 2.0 which is fully based on JAVA. If you are more familiar with MATLAB language, we suggest you to try VeriSiMPL version 1.4 which is fully based on MATLAB. -
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ChelomEx
Isotope assisted discovery of metal chelating agents from LC-MS data
... in future versions please send me a message. The current version ChelomEx 1.2 from 06 January 2016 includes the following changes to the original version (ChelomEx 1.0): - function to filter discovered isotope patterns after the first analysis step (isotope pattern search), accessible in the Isotope Pattern toolbar (v1.2) - updates for compatibility with MatLab versions after 2014b (v1.2) - siderophore database update (v1.1) - can now also analyze negative mode data (v1.1) - bug fixes (v1.1) -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific... -
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Matlab software for analysis of skin conductance data (SC; viz., electrodermal activity, EDA; galvanic skin response, GSR). Data decomposition and scientific analysis based on deconvolution approach. Various functions via GUI or batch-mode.
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FractalAnalyzer
A GUI application for multifractal seismicity analysis of earthquakes.
Reference: Roy, P. N. S. and Gupta, D. K., 2015, FractalAnalyzer: A MATLAB Application for Multifractal Seismicity Analysis, Seismological Research Letters, 86 (5). -
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YASAV
SRAM Memory Aging Simulator for Image/Video Processing Systems
YASAV is a GUI-based tool for fast analysis and visualization of SRAM based memory aging. The customization is done for YUV videos to realize use cases for image/video processing applications. This tool accepts SRAM scratchpad memory configuration and user parameters (like test data sets, required aging years etc.) and provides aging estimates in terms of Static Noise Margin (the metric of SRAM aging estimation) and in-depth duty cycle analysis. This tool also supports automatic visualization... -
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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OpenSeesGUI
A simple GUI for post-processing data files from OpenSees analysis.
A simple GUI for post-processing data files from OpenSees analysis. -
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igafem
Open source 3D Matlab Isogeometric Analysis Code
Isogeometric analysis (IGA) is a fundamental step forward in computational mechanics that offers the possibility of integrating methods for analysis into Computer Aided Design (CAD) tools and vice versa. The benefits of such an approach are evident, since the time taken from design to analysis is greatly reduced leading to large savings in cost and time for industry. The tight coupling of CAD and analysis within IGA requires knowledge from both fields and it is one of the goals of the MIGFEM... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
... or tailored for processing two-dimensional matrix. The MatrixUser is a software package which features functions designed and optimized specifically for manipulating multidimensional real or complex data matrix. MatrixUser provides a nice graphical environment for easily performing image analysis tasks including multidimensional image display, matrix (image stack) processing and rendering etc. MatrixUser is a great lightweight tool for users who are working in image processing field under Matlab. -
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Matlab Community Detection Toolbox
CDTB is a MATLAB toolbox which performs Community Detection
... the functions from the MATLAB command line; or he can write his own code, incorporating the CDTB functions; or he can use the Graphical User Interface (GUI) which automates the community detection and includes some data visualization options. -
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ImageComponentParser
Matlab tool for automated analysis of Voltage and Calcium Imaging Data
The ImageComoponentParser is a matlab tool for automated analysis of Voltage and Calcium Imaging Data. The main functionality is automated extraction of component signals using PCA and ICA. The GUI enables the user to alter the settings, browse the components, manually remove artifacts, and visualize functional activity. -
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TrackArt
GUI for diffusion simulation and SMT data analysis
TrackArt is a simple MATLAB GUI for single particle tracking data analysis and simulation. -
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AMICA
Adaptive Mixture Independent Component Analysis with Shared Components
Multiple mixture ICA, where model means and independent components are learned. It is possible to reject data and share component between models to increase efficiency. Matlab and independent gui (using Qt) nterfaces available. Uses MPI and OpenMP for inter-node and intra-node parallelization. -
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SpikeAnalyzer
SpikeAnalyzer is a program for calcium spikes analysis
SpikeAnalyzer is a semiautomatic program for analysis of calcium spikes in cardiac myocytes created in the MATLAB environment. The analysis parameters are automatically initialized upon loading the electrophysiological and confocal data in their respective proprietary formats (confocal data - .tif, electrophysiological data – .abf ver. 2.0). The analysis starts with interactive selection of spike positions and determining their temporal fluorescence profiles. The data approximation uses...