Search Results for "awk read input file delimited output delimited file"
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Showing 9 open source projects for "awk read input file delimited output delimited file"
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Whether natural disaster, cyberattack, or plain-old human error, data can disappear in the blink of an eye. ConnectWise BCDR (formerly Recover) delivers reliable and secure backup and disaster recovery backed by powerful automation and a 24/7 NOC to get your clients back to work in minutes, not days.
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Desktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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YeastpRofileSpearman
Software to calculate profiles around TSS and TTS of yeast mRNAs
... variable values and the TSS (or TTS) counts at incremental shifting of transcribed strand. The data of TSS and TTS counts used to compute the cross-correlation profiles were taken from the work of Pelechano et al. (1). The input file must be a BedGraph formatted file based on yeast genome sequence release R64. The output file is a text tab-delimited table reporting Rs values for the various shifts of variable coordinates with respect to TSS or TTS. 1) V. Pelechano et al., Nature, 497 (2013) 127-13. -
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YeastpRofile
Software to calculate profiles around TSS and TTS of yeast mRNAs
...). The input file must be a BedGraph formatted file based on yeast genome sequence release R64. The output file is a text tab-delimited table reporting R values for the various shifts of variable coordinates with respect to TSS or TTS. R related to each strand is also reported to verify that a similar profile is obtained in the two direction of transcription. 1) V. Pelechano, W. Wei, L.M. Steinmetz, Extensive transcriptional heterogeneity revealed by isoform profiling, Nature, 497 (2013) 127-13. -
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SCEO
Single Cell Event Ordering Algorithm
This is an implementation of the Single Cell Event Ordering algorithm that was described in J. De Bie et al., "Single cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukaemia". Usage: java -jar SCEO.jar input=input.txt output=output.txt N=n with input = input file containing tab delimited matrix with for each gene a (named) row and for each cell a (named) column with the values 1=event present, 0=event absent, -1=NA output = output... -
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The friendly GWAS SNP enrichment tool
Tests for enrichment of GWAS SNPs in epigenetic datasets
User friendly program written in python and using bedtools to test for enrichment of GWAS SNPs in genomic annotation datasets. A specific feature is it tests for enrichment by locus not by individual SNPs. The user supplies 3 types of files. The first two files are a list of target SNPs and a list of background SNPs. To make the program user friendly the input format is simply the raw output from the popular haploreg program. Simply cut and paste that output into a text file. The genomic... -
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DNase2Hotspots
This software identifies tag-enriched regions(hotspots) from DNase-seq
DNase2Hotspots is a software package for identifying tag-enriched genomic regions (hotspots) from the DNase-Seq genomic data. This program reads a BAM (Binary Alignment/Map) file or tab-delimited text files as input and produces a list of hotspot candidates and associated z-scores as output. Mappability profiles for the reference genome and genomic regions of repeat maskers are also required as input. -
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GenomeRunner
Annotation and enrichment of Next-Gen sequencing data
... (tab-delimited text file with chrom, chromStart, chromEnd). Annotation analysis output - detailed annotation of each genomic region in input data. Used to prioritize individual genomic regions by the total number of epigenomic features they co-localize with. Enrichment analysis output - p-values of statistically significant co-localizations of input genome-wide data with genome annotation features selected for the analysis. Used to prioritize epigenomic features associated with user data. -
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LaTeX Table Creator
Simple Cross-platform LaTeX table creator with a GUI and console app.
A no frills cross-platform LaTeX table creator. Uses the output of standard spreadsheet software (MS Office, Libre Office, Gnumeric) to create a LaTeX tabular object that contains the specified data. Automatically detects the size of the table. The user can optionaly specify some basic formatting information, such as alignment, borders, bold headings. The user can also select if the input is tab (default) or comma delimited and can disable the tabular structure in the output. This allows... -
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Large Text File converter
Java Based Heavy-duty utilitity to process large delimited text files
... design allows to generate as many output files as required from one input file, and at every row of input file validation, extraction, conversion can be applied. Use case Example: legacy system is to be replaced with new advanced system with different DB schema, and the data provided as 100GB size of delimited text data which is to be inserted in 10 different tables of new system DB after validation,date format conversion, rearrangements, and MD5 hashing implementation. -
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Zip Code Finder is an application written in Java for cleaning up mailing lists. It will lookup the zip code of any address missing a USPS zip in a tab-delimited input file and it will output the results to another tab-delimited file.
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