Search Results for "active contour method"
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Showing 31 open source projects for "active contour method"
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JavaParser
Java 1-17 Parser and Abstract Syntax Tree for Java
..., JavaSymbolSolver analyzes that AST and is able to find the relation between an element and its declaration (e.g. for a variable name it could be a parameter of a method, providing information about its type, position in the AST, etc). When choosing open source technologies it is important to know your choice will be rewarded by continuous support. The JavaParser community is vibrant and active, with a weekly release cadence that supports language features up to Java 12. -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
nichenetr: the R implementation of the NicheNet method. The goal of NicheNet is to study intercellular communication from a computational perspective. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with a prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest. This model of prior information on potential... -
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TwitterOAuth
PHP library for use with the Twitter OAuth REST API
The most popular PHP library for use with the Twitter OAuth REST API. The recommended and easy as pie method is Composer. Setup require in your projects composer.json file. Import the TwitterOAuth class. Start making API requests. Versions listed as "active support" or "security fixes" are supported. Unlike many Twitter API libraries, TwitterOAuth doesn't provide a custom function for every API method. Instead there are a couple of generic functions so that as Twitter adds features to the API... -
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GraphQL Batch
A query batching executor for the graphql gem
A query batching executor for the graphql gem. Provides an executor for the graphql gem which allows queries to be batched. Define a custom loader, which is initialized with arguments that are used for grouping and a perform method for performing the batch load. Use GraphQL::Batch as a plugin in your schema after specifying the mutation so that GraphQL::Batch can extend the mutation fields to clear the cache after they are resolved. The loader class can be used from the resolver for a graphql... -
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electron-util
Useful utilities for Electron apps and modules
.... If no platform key is matched, the default key is used if it exists. If the value is a function, it will be executed, and the returned value will be used. On macOS, for security reasons, if an app is launched outside the Applications folder, it will run in a read-only disk image, which could cause subtle problems for your app. Use this method to ensure the app lives in the Applications folder. -
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Docker Gitlab
Dockerized GitLab
Dockerfile to build a GitLab image for the Docker opensource container platform. GitLab CE is set up in the Docker image using the install from source method as documented in the the official GitLab documentation. For other methods to install GitLab please refer to the Official GitLab Installation Guide which includes a GitLab image for Docker. Docker is a relatively new project and is active being developed and tested by a thriving community of developers and testers and every release... -
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Walrus
Lightweight Python utilities for working with Redis
The purpose of walrus is to make working with Redis in Python a little easier. Rather than ask you to learn a new library, walrus subclasses and extends the popular redis-py client, allowing it to be used as a drop-in replacement. In addition to all the features in redis-py, walrus adds support for some newer commands, including full support for streams and consumer groups. Persistent structures implemented on top of Hashes. Supports secondary indexes to allow filtering on equality,... -
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ITK-SNAP is a tool for segmenting anatomical structures in medical images. It provides an automatic active contour segmentation pipeline, along with supporting manual segmentation toolbox. ITK-SNAP has a full-featured UI aimed at clinical researchers.
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ConceptBase.cc
A Database System for Metamodeling and Method Engineering
ConceptBase.cc is a multi-user deductive and object-oriented database system for metamodeling and method engineering. Includes a graphical client that builds upon the logic-based features of the ConceptBase.cc server. The data model is O-Telos. ConceptBase.cc can represent information at the data level (example data, traces of process executions etc.), the class level (schemas, process definitions etc.), the metaclass level (constructs of modeling languages), the meta-metaclass level... -
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tdsft
TDSFT (Two-Dimensional Segmentation Fusion Tool)
Given multiple segmentations related to the same tumor, statistical metrics could be exploited to determine the most reliable one, from there identified as ground truth. Numerous algorithms have been developed over time, but to date, there is no validated method for this procedure. Therefore, research is still active in this area. Two-Dimensional Segmentation Fusion Tool (TDSFT) is an open-source tool developed in MATLAB and distributed as a standalone application for MAC, Linux, and Windows... -
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peerchat
A terminal-based P2P chat application using libp2p and Golang
A terminal-based P2P chat application using libp2p and Golang that uses a Kademlia DHT and the IPFS network for peer discovery and routing. The application was inspired by chat examples found on libp2p's pubsub library, but is more evolved and fully featured version of it. It uses a Kademlia DHT from libp2p for peer discovery and routing and supports a more fully featured host. The other components of the libp2p such as TLS encryption, peer active discovery, YAMUX stream multiplexing... -
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Sudomy
Sudomy is a subdomain enumeration tool to collect subdomains
Sudomy is a subdomain enumeration tool to collect subdomains and analyze domains performing advanced automated reconnaissance (framework). This tool can also be used for OSINT (Open-source intelligence) activities. Easy, light, fast and powerful. Bash script (controller) is available by default in almost all Linux distributions. By using bash script multiprocessing feature, all processors will be utilized optimally. Subdomain enumeration process can be achieved by using active method or passive... -
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jQuery Fullscreen Plugin
Plugin provides a simple to use mechanism to control fullscreen mode
This jQuery plugin provides a simple-to-use mechanism to control the new fullscreen mode of modern browsers. Currently, only newer Webkit-based browsers (Like Chrome and Safari), Firefox and IE11+ provide this new fullscreen feature. Simply pass no argument to the fullScreen method to query the current state. The method returns the current fullscreen element (or true if browser doesn't support this) when fullscreen mode is active, false if not active or null when the browser does not support... -
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greenDAO
Light ORM solution for Android that maps objects to SQLite databases
Android ORM for your SQLite database. For new apps we recommend ObjectBox, a new object-oriented database that is much faster than SQLite and easier to use. For existing apps based on greenDAO we offer DaoCompat for an easy switch (see also the announcement). greenDAO is an open source Android ORM making development for SQLite databases fun again. It relieves developers from dealing with low-level database requirements while saving development time. SQLite is an awesome embedded relational... -
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AppDeploy neXtgen
Free AD integrated software distribution for Windows workstations
AppDeploy neXtGen is a clever and simple software distribution. The solutions expandes the Microsoft Active Directory group policy delivery method. No agent installation is required. The software runs silently in the background during the start-up process, for express rollouts there is also a push functionality with wake-on-LAN included. Associations between workstations and software-packages are controlled by group memberships in Microsoft Active Directory or, in future versions, by using... -
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Source code for the article: 'The Influence of Object Shape on the Convergence of Active Contour Models for Image Segmentation'. Images and .mat files are included to both run active contour models and create phase diagrams showing how object shape and choice of parameters affect the convergence of the models.
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
... for extracting object contour and refining shapes. The software is implemented in MATLAB for segmenting and tracking of cell contours from various microscopy systems. Video instructions: https://www.youtube.com/embed/qMbM0shkk7A?rel Lastest updates: 20190930 DSeg: A dynamic segmentation program to extract backbone patterns for filamentous bacteria and hyphae structures,(2018). Hanqing Zhang,Niklas Soderholm, Linda Sandblad, Krister Wiklund, Magnus Andersson* -
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julia-vim
Vim support for Julia.
Vim support for Julia. This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands... -
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Casino-BlackJack
Blackjack skill and card counting training
A simple Casino BlackJack card game written in C# as part of my learning assignment a few years ago and it is not intent to be a full feature game. This project is to demostrate the way to build a simple card game and only cover the very basic of blackjack rule with standard card counting method. To active counting monitor, please select "Manual shuffle on the setting manu. Use this game to train your card counting skill before you go to the real casion. Sorce code available... -
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BabyBluetooth
The easiest way to use Bluetooth
... to functions and order, and provides many methods to reduce the amount of code in the Bluetooth development process. Chain method body, the code is more concise and elegant. Distinguish delegated calls through channel switching, and facilitate switching. Complete documentation, and the project is active, constantly updated. -
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MagicalRecord
Easy Fetching for Core Data!
In software engineering, the active record pattern is a design pattern found in software that stores its data in relational databases. It was named by Martin Fowler in his book Patterns of Enterprise Application Architecture. The interface to such an object would include functions such as Insert, Update, and Delete, plus properties that correspond more-or-less directly to the columns in the underlying database table. Active record is an approach to accessing data in a database. A database table... -
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PortOpt
A portfolio-optimizer using Markowitz(1952) mean-variance model
... portfolio. In order to minimise the variance it internally uses QuadProg++, a library that implement the algorithm of Goldfarb and Idnani for the solution of a (convex) Quadratic Programming problem by means of an active-set dual method. This solution is very efficient as it allows to solve hundred of thousand of portfolio problems in seconds. PortOpt runs as a text/console tool so it can be easily used in your own scripts. -
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YAFEMS
Yet Another Finite Element Method Solver
YAFEMS (Yet Another Finite Element Method Solver) is a FEM solver for Linux and WIndows that reads a MED mesh file produced by Salome (http://www.salome-platform.org/) with certain groups created into the mesh, and with the help of an input text file (.yaf), performs a 3D or 2D plane stress or plane strain analysis and creates results in plain text format and in MED format. This way a complete analysis can be carried inside Salome, where a mesh file can be created, exported and read... -
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While many people enjoy S-3D, it is a well-known fact that a minority of the population is not able to perceive S-3D. These people have problems with stereopsis, or the ability of our brain to unconsciously fuse two 2D images into a single 3D percept. In clinical practice, several stereopsis tests are used to measure this deficiency. Most of these tests are expensive paper-and-pencil tests requiring trained observers. In this paper, we discuss a recently developed method to test stereopsis...
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AMBIENT
Find active modules in metabolic networks using high-throughput data
IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have...