Search Results for "gnu science" - Page 93
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Showing 11016 open source projects for "gnu science"
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TUIT
Taxonomic Unit Identification Tool
For the installation instructions please see Wiki page: https://sourceforge.net/p/tuit/wiki/ IMPORTANT: since version 1.0.4.0 TUIT allows to select RDP-like formatted output to improve out of the box compatability with tools, that assume RDP-formatted input. A new field has been added to the properties.xml, please make sure to update it to contain <OutputFormat format="tuit"/> or <OutputFormat format="rdp"/> in the <BLASTNParameters> section. Read our paper in Biotechniques:... -
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Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
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An implementation of the Kernel-based Orthogonal Projections to Latent Structures (K-OPLS) method for MATLAB and R. The supplied functionality includes e.g. cross-validation, kernel parameter optimization, model diagnostics and plot tools.
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Pugsly
Command-line, PubChem PUG client, written in Python
Command-line, PubChem PUG client, written in Python; developed for Linux -
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Pyntrez
Command-line, Entrez, NCBI e-utilities client, written in Python
Command-line, Entrez, NCBI e-utilities client, written in Python; developed for Linux -
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DIASER
Cloud storage class, open source software.
DIASER, Geo-data duplication long-term archive system & WAN vault. Manage mixed data archives generated by existing backup software. Ensure availability using commodity hardware. Retain administrative and financial control. -
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cnvOffSeq
detecting & genotyping intergenic CNVs using off-target exome data
cnvOffSeq is a set of Java-based command-line tools for detecting and genotyping intergenic copy number variation (CNV) using off-target data from whole-exome sequencing experiments. -
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Pugsly PubChem Client
Command-line, PubChem PUG client, written in Python
Client to the PubChem Tool (PCT), The Power User Gateway (PUG). Written in Python and developed for use with Linux. -
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Research Master
wxpython research organization tool with LaTeX flashcards
ResearchMaster is a tool that you can trust to help with organization, multitasking, and research. ResearchMaster provides a place to capture your fleeting thoughts and ideas, and it allows you to hit-the-ground-running on projects. -
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NumMath
Numerical methods calculation with graphs
Math is a program designed to calculate roots of nonlinear equation, roots of system of linear equations, differentiate, integrate, approximate using LMS, matrix calculation using numerical methods for calculating results, estimated errors and much more. Math is also capable of drawing standard functions using graph dialog window to help with visualization functions, results, or approximation with given points and much more. All data can be exported in most common formats like PDF, PNG, TXT, etc. -
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Pyntrez NCBI Database Client
Command-line, Entrez, NCBI e-utilities client, written in Python
Comman-line client to Entrez, e-utilities, written in Python, developed for Linux -
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potfit
potfit force-matching code
The potfit code uses the force-matching method to generate effective potentials from ab-initio reference data. -
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Manifold mesh processing
Mesh and point cloud processing tools
A suite of tools for processing and analyzing meshes and point clouds. 1) Ensuring that meshes are manifold, ie, "nice" 2) Simple smoothing/noise reduction 3) Bare-bones point cloud to mesh and robust normals for point clouds 4) Mesh simplification 5) Curvature calculation on meshes 6) Local shape descriptors on meshes -
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AIStockBot
Stock Analysis Program
AIStockBot aims to become the greatest Technical and Fundamental Stock Analysis program using different approaches including Artificial Intelligence. It strives to recommend stocks better than your average Financial Adviser. -
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Marsyas (Music Analysis, Retrieval and Synthesis for Audio Signals) is a framework for developing systems for audio processing. It provides an general architecture for connecting audio, soundfiles, signal processing blocks and machine learning. Source code at SF is outdated! Marsyas is now hosted at GitHub: https://github.com/marsyas/marsyas Downloads are now provided at Bintray: https://bintray.com/marsyas
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OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability...
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ThermV
Comprehensive thermal analysis software package
ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project is... -
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ISO 639-3 defines about 7000-8000 known languages. Digitize ISO 639-3 Translations Project intends to collect all languages to languages translations and put them into public.
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ALTER is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.
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wreport has moved to: https://github.com/ARPA-SIMC/wreport dballe has moved to: https://github.com/ARPA-SIMC/dballe bufr2netcdf has moved to: https://github.com/ARPA-SIMC/bufr2netcdf
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JBEAM
Java based Batch scheduling, processing and monitoring framework
JBEAM can be leveraged to 1. Define a batch calendar 2. Schedule and execute end of the day processing of business objects 3. Schedule execution of inbound and outbound interface jobs 4. Schedule any end of business day or monthly reports 5. Monitoring of the Jobs status and execution -
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IMPORTANT! As of version 1.2, cclib development has moved to github. Please use the flowing pages for up-to-date information about cclib: Repository (source code, tracker) - https://github.com/cclib/cclib Online documentation - http://cclib.github.io/ cclib is an open source library, written in Python, for parsing and interpreting the results of computational chemistry packages. It currently parses output files from ADF, Firefly, GAMESS, GAMESS-UK, Gaussian, Jaguar and ORCA.
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AVRS performs spatial 3D-sound processing allowing the arbitrary placement of sound source in auditory space. The main goal is to develop a genuine experimental flexible platform, that runs in a general-purpose architecture computer (standard hardware and software).
