Search Results for "genetic algorithm java" - Page 9
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Showing 907 open source projects for "genetic algorithm java"
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU. IEEE... -
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jasuso
Sudoku solver in Java
This is a basic Sudoko solver written in Java using JavaFX and FXML. The solver uses a basic recursive backtrack algorithm. -
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HaploView is a Java based tool for use by biologists in the study of genetic haplotype data. It provides a quick, easy interface to many common tasks involved in such analyses. Please go to the homepage below for the latest version!
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software... -
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Glycosylation Microviewer
An application create, simulate and adjust N-linked glycosylation.
Glycosylation Microviewer is an application that create N-linked glycosylation raction network. The model used in the application is based on two significant papers: 1.1997 Pablo Umana, James E.Bailey A Mathematical Model of N-linked Glycoform Biosynthesis. 2.2005 Frederick J.Krambeck, Michael J.Betenbaugh A Mathematical Model of N-linked Glycosylation. The application allow to simulate the network in dynamic form with various ODE solvers(Euler, Runge-Kutta etc). Genetic Algorithm... -
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sWangTiler
A java implementation that generates wang tiles from any input image.
sWangTiler is a java implementation that generates wang tiles from any given input image. By assembling wang tiles that share common edges (like domino pieces) one may generate textures of any desired size. Wang tiles greatly reduce visible repetitions making textures seem more natural and thus improve the quality of any graphic application like games, simulations etc. This implementation is based on the strict wang tile algorithm as proposed by Xinyu Zhang and Young J. Kim in "Efficient... -
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GeneticThesaurus
Annotation of genetic variants in repetitive regions
GeneticThesaurus enables analysis of genetic variation in repetitive regions. See project wiki for details. -
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Genetic Algorithms Engine - Blackjack
A genetic algortihm engine that evolves blackjack basic strategy.
This project is a genetic algorithm engine able to be reused for other projects with minimal additional programming. The genetic algorithm engine currently plays many blackjack hands for the fitness function and produces a result similar to blackjack basic strategy. To see it in action, download the zip file and run either: GABlackjack_Demo.exe (quick) or GABlackjack_Long.exe (slow, but it achieves better results). The code was written in C++, using MS Visual Studio 6.0... -
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KWANSO
MANAGING ROAD TRAFFIC CONGESTION VIA TRANSPORT TELEMATICS AND MOBILE
The developed application is useful in overcoming congestion challenge in Ghana which is a major drawback leading to over consumption of fuel, deployment of many traffic supervisors. We utilized vehicular routing algorithms and techniques modeled from the study of packet traffic decongestion on computer data networks. Our modeled algorithm is executed over the generated routes using real time traffic data stored in an oracle database as the routing metric of computation. The application... -
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Stemmer Gujarati
Offline stemmer for Gujarati , which is one of 22 Indian languages.
This is a Gujarati stemmer in Java. Stemming is a process in which affixes are removed form the root word (stem). It relates morphological variant words to corresponding common root. For example "પ્રતિઉપયોગી" is word which has stem " ઉપયોગ". Stemmers are language specific tools. The design of a stemming algorithm requires a significant level of linguistic expertise. There has been lot of significant work in the development and evaluation of stemmer for non-Indian languages, but very less... -
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Cyberphantom Alfa Colony
AI new tipe
This is an experimental project whose main objective is the creation of artificial intelligence (AI) new tipe. At the core of this idea is the use of special genetic algorithm that emulates the single-celled organism. The colony of such cybernetic organisms can give rise to a "reasonable" network that have a huge intellect and computing power. -
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Cenobi
cost estimation and management accounting, using neural networks
Cenobi is designed for management accountants, not (only) for statisticians and data mining experts. Carefully arranged default settings make sure you can concentrate on Cenobi's many accounting features rather than worrying about setting up artificial neural networks or genetic algorithms, which are the main machine learning tools under Cenobi's hood. Cenobi's main benefits are: - ease of use - Utilizing artificial neural networks to estimate cost relationships, Cenobi is able... -
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diggit
R package for DIGGIT algorithm
DIGGIT identify genetic variants associated with drivers of specific physiopathologic states. I computes the statistical association between the presence of genetic variants (CNV or SNP) and the activity of proteins driving physiologic or pathologic phenotype. It requires large gene expression and genetic variants datasets and depends on context-specific regulatory networks including transcriptional interactomes (usually reverse engineered by the ARACNe algorithm) and post-translational... -
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mpz_aprcl
MPZ APRCL can prove the primality of numbers, written in C and GMP.
This code contains an implementation of the APR-CL primality proving algorithm. It is a conversion of the Java based APRT-CLE written by Dario Alpern, who had written his based on the UBASIC version from Yuji Kida. This version incorporates improvements based on Jason Moxham's APR-CL code, which greatly reduced run-time memory requirements. mpz_aprcl is meant to be compiled on systems that support C, GMP, and a 64-bit data type. It can prove the primality of numbers up to 6021 digits long... -
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Intelligent Keyword Miner
Intelligent SEO keyword miner and predicing tool
..., you can choose to reset or train it further. Programs that have similar idea are: Google AdWords, SERPWoo's Keyword Finder, Wordpot, and others. Difference is, this program is intelligent and it accepts your input data and then predicts keywords based on your likes or dislikes. As the main engine, it uses the SMOReg algorithm to analyze and map the keyword frequencies of your data. This can be a great SEO tool to help increase the traffic of any website featuring a product. -
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MODLEM
rule-based, WEKA compatible, Machine Learning algorithm
This project is a WEKA (Waikato Environment for Knowledge Analysis) compatible implementation of MODLEM - a Machine Learning algorithm which induces minimum set of rules. These rules can be adopted as a classifier (in terms of ML). It is a sequential covering algorithm, which was invented to cope with numeric data without discretization. Actually the nominal and numeric attributes are treated in the same way: attribute's space is being searched to find the best rule condition during rule... -
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mpz_aprcl32
MPZ APRCL32 can prove the primality of numbers, written in C and GMP.
This code contains an implementation of the APR-CL primality proving algorithm. It is a conversion of the Java based APRT-CLE written by Dario Alpern, who had written his based on the UBASIC version from Yuji Kida. This version incorporates improvements based on Jason Moxham's APR-CL code, which greatly reduced run-time memory requirements. mpz_aprcl is meant to be compiled on systems that support C, GMP, and a 64-bit data type. It can prove the primality of numbers up to 6021 digits long... -
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fPotencia
Power flow library in C++
.... fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. All of them in native code and whenever possible with the same modular structure. -
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OnAGUI - Ontology Alignment GUI
Software to help automatic or manual realisation of ontologi alignment
This project has moved to https://github.com/lmazuel/onagui - OnAGUI (Ontology Alignment Graphical User Interface) is a project of alignment helper and viewer. You can edit ontology (SKOS, OWL) and edit alignment between concept of these ontologies. In addition, you can make automatic discovery of alignment, using different kind of algorithm. This work was initiated by Jean Charlet (http://www.limics.fr/index.php/annuaire), designed and developped by Laurent Mazuel on a post-doctoral... -
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deapheap
Deap is a doubly heap for both min and max number access.
A deap is a doubly priority queue for efficient data operations. Both insertion and deletion operations take O(log(N)) time. Access of min or max takes constant time. It can be useful when both min and max are needed in the queue. It can also be used in situations where the number of items is too large and items with low priorities can be dropped with keep memory footprint small. -
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ESTReMo
An evolutionary simulator of transcription regulatory networks
ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds. -
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EurekaOptima is a framework for optimization containing the implementation of several algorithms like Genetic Algorithm (GA), Clonal Selection Algorithm (CLONALG), Grammatical Evolution (GE), Differential Evolution (DE), and Evolution Strategy (ES).
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Java Beagle
A symbolic regression platform in java
Java beagle is my gratitude for genetic programming. It is based on beagle puppy, by open-beagle project. It is mainly designed for symbolic regression tasks. It implements a number of other algorithms for more efficient symbolic regression. These include lexicographic parsimony pressure, linear scaling and subtree caching. -
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quickGA-m
A quick (messy?) genetic algorithm to solve TSP
A quick genetic algorithm to solve TSP scenarios. Written in Matlab. Circa June 2012. -
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An easy-to-implement library that can assist Java developers in using the GeoHash algorithm in order to create geocodes based on custom latitude and longitude values. With the help of jGeohash, software developers will be able to quickly and easily generate a geohash code using user-defined latitude and longitude values. By using the GeoHash algorithm, the space can be divided into multiple grid shapes. This library is a basic implementation from the GeoHash algorithm written in the java...
