Search Results for "genetic algorithm java" - Page 9
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Showing 926 open source projects for "genetic algorithm java"
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TreeLayout
Efficient and customizable TreeLayout Algorithm in Java, for NetBeans
Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. Development for TreeLayout has moved to... -
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DE-HEoC
DE-based Weight Optimisation for Heterogeneous Ensemble
We propose the use of Differential Evolution algorithm for the weight adjustment of base classifiers used in weighted voting heterogeneous ensemble of classifier. Average Matthews Correlation Coefficient (MCC) score, calculated over 10-fold cross-validation, has been used as the measure of quality of an ensemble. DE/rand/1/bin algorithm has been utilised to maximize the average MCC score calculated using 10-fold cross-validation on training dataset. The voting weights of base classifiers are... -
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Animal Studies
Animal Studies
Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp The Animal Studies module is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Animal Studies requires minimal computing skills. Genetic and physiological data can be... -
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Lab Processes
Rediscover the Simplicity http://www.atgclabs.com/
Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp Lab Processes is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Lab Processes requires minimal computing skills. Genetic and physiological data can be entered either... -
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jPass - Cross-Platform Password Manager
Compiled into a single .jar file. Tiny Password Manager. Portable
I did not see a pre-built version of this software on the original developers Github project (https://github.com/gaborbata/jpass), so I am taking it upon myself to compile the releases as they come, so that others don't have to. --Description-- JPass is a simple, small, portable password manager application with strong encryption. It allows you to store user names, passwords, URLs and generic notes in an encrypted file protected by one master password. I will not add the source... -
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Java CoreWars Evolver
A Java based, pMars compatible, CoreWars simulator with GA
A Java based, pMars compatible, CoreWars simulator with Genetic Algorithm warrior evolver functionality. Java 8 is needed. See [Wiki:Tutorial] -
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CliqueSquare
Distributed RDF Processing over Hadoop
CliqueSquare is a system for storing and querying large RDF graphs relying on Hadoop’s distributed file system (HDFS) and Hadoop’s MapReduce open-source implementation. It provides a novel partitioning and storage scheme that permits 1-level joins to be evaluated locally using efficient map-only joins. In addition, CliqueSquare is equipped with a unique optimization algorithm based on graphs and cliques capable of generating highly parallelizable flat query plans relying on n-ary equality joins. -
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GEAR: GEnetic Analysis Repository
GEnetic Analysis Repository
Genetic analysis repository. So far contributed by GenetiCker: a geneticist and a hacker. -
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JAABA
The Janelia Automated Animal Behavior Annotator
The Janelia Automatic Animal Behavior Annotator (JAABA) is a machine learning-based system that enables researchers to automatically compute interpretable, quantitative statistics describing video of behaving animals. Through our system, users encode their intuition about the structure of behavior by labeling the behavior of the animal, e.g. walking, grooming, or following, in a small set of video frames. JAABA uses machine learning techniques to convert these manual labels into behavior... -
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Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.
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JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included. Legal notice/Impressum: Klaus Meffert An der Struth 25 D-65510 Idstein sourceforge <at> klausmeffert.de
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Chemin Optimal
allow to Find the optimal path using FORD algorithm
Chemin optimal allows to draw nodes on a scene and link them with Arcs. You can affect values to each arc (the path's length). By clicking the launch button, chemin optimal show you the optimal path of the graphs using FORD algorithm. All operations are shown step by step. You can export the scene to a XML file. You can also load scene freom existing XML file. Chemin optimal check errors automatically before finding the minimal path. Chemin optimal is written in JAVA( JAVAFX ). -
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Tetris Puzzle Solver
Fills a rectangle using given tetris shapes
Fills a rectangle using given tetris shapes (tetraminos) using an optimized brute force algorithm. A puzzle can have many different solutions; this solver will stop at the first one. Not all puzzles are solveable. Created to solve the annoying tetris puzzles in The Talos Principle and Sigils of Elohim. -
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MOEA Framework
A Free and Open Source Java Framework for Multiobjective Optimization
The MOEA Framework is a free and open source Java library for developing and experimenting with multiobjective evolutionary algorithms (MOEAs) and other general-purpose multiobjective optimization algorithms. The MOEA Framework supports genetic algorithms, differential evolution, particle swarm optimization, genetic programming, grammatical evolution, and more. A number of algorithms are provided out-of-the-box, including NSGA-II, NSGA-III, ε-MOEA, GDE3 and MOEA/D. ... -
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The project objective is the development of an optimization algorithm for the problem of stowing general cargo into platform supply vessels.
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Oxe is a web application that enables network monitoring. It is built on a service-oriented and a demon that uses the round robin algorithm for monitoring architecture. Written in Java GPL v3 license.
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AESA
All-purpose Encryption and Security Adaptation
Starting as a personal study project, I have decided to share this security project. For now, it is a JAVA program that can be used to encrypt and decrypt simple file content (ie files), possibly later evolving into a utility with user interface and/or a library -
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Simple File Manager
A simple file manager especially for flash disks
It is a simple software implemented with Java. The running environment is Java SE8, with some features of Javafx to improve the UI appearance. -
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GeneticThesaurus
Annotation of genetic variants in repetitive regions
GeneticThesaurus enables analysis of genetic variation in repetitive regions. See project wiki for details. -
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jasuso
Sudoku solver in Java
This is a basic Sudoko solver written in Java using JavaFX and FXML. The solver uses a basic recursive backtrack algorithm. -
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diggit
R package for DIGGIT algorithm
DIGGIT identify genetic variants associated with drivers of specific physiopathologic states. I computes the statistical association between the presence of genetic variants (CNV or SNP) and the activity of proteins driving physiologic or pathologic phenotype. It requires large gene expression and genetic variants datasets and depends on context-specific regulatory networks including transcriptional interactomes (usually reverse engineered by the ARACNe algorithm) and post-translational interactomes (usually generated by the MINDy algorithm). ... -
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. -
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Glycosylation Microviewer
An application create, simulate and adjust N-linked glycosylation.
...The model used in the application is based on two significant papers: 1.1997 Pablo Umana, James E.Bailey A Mathematical Model of N-linked Glycoform Biosynthesis. 2.2005 Frederick J.Krambeck, Michael J.Betenbaugh A Mathematical Model of N-linked Glycosylation. The application allow to simulate the network in dynamic form with various ODE solvers(Euler, Runge-Kutta etc). Genetic Algorithm is used to adjust the kinetic parameters of Michaelis-Menten equations in glycosylation reaction network. A dynamic plot is supplied to show the value of mole amout and mole fraction of various glycoform. Thanks to Alexey Balakin and Alessandro Presta. Alexey Balakin supply mathgl(https://sourceforge.net/projects/mathgl) that make the implementation of dynamic plot in this application easily. ... -
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sWangTiler
A java implementation that generates wang tiles from any input image.
...This implementation is based on the strict wang tile algorithm as proposed by Xinyu Zhang and Young J. Kim in "Efficient Texture Synthesis Using Strict Wang Tiles". In order to calculate the lowest cost path between any edge- and sample image an implementation of Dijkstra's algorithm is used which was found in the java graph library 'JGraphT'. Credits to all mentioned parties and to http://www.texturemate.com/.
