Search Results for "gnu science" - Page 77
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Showing 11014 open source projects for "gnu science"
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lasYmat provides a set of Matlab routines for reading and writing LAS files. LAS is a world wide Oil & Gas industry standard for distribution of Well Log data.
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AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
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Analysis software for Nbody/SPH or SPH simulations (e.g. performed with Gadget II). See http://sourceforge.net/apps/wordpress/hyplot/about and http://sourceforge.net/apps/trac/hyplot/wiki for more information.
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Argunet
argument map editor for analyzing and visualizing complex debates
Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server. -
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kovacs.util (Java numerical classes)
!!! moved to jnum subproject under crush-software !!!
This project has be renamed to jnum and moved under the crush-software project. No further SVN commits here... -
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FPF_predict
Fine Particle Fraction (FPF) predictor
Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN -
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NppToR: R in Notepad++
NppToR provides R auto-completion and code passing between Notepad++ a
Similar to the windows R gui built in editor, NppToR aims to extend the functionality of code passing to the Notepad++ code editor. In addition to passing to the R gui, NppToR provides optional passing to a PuTTY window for passing to an R instance a remote machine. Easy shortcuts are also provided for easy batch execution, with a monitor for longer running scripts. -
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Implicit BPM
An Implicit BPM approach
Implicit BPM is a platform for integrating business processes into existing core applications as if they were a whole system. It uses a novel concept, namely Workflow Weaving, based on non-intrusive techniques, which achieves this kind of integration transparently. -
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czplib
Chaolin Zhang's Perl Library
Chaolin Zhang's Bioinformatic Perl Library -
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testMaker is a software for web-based assessment. It provides the possibility to create and publish tests and questionnaires without requiring any programming experience. For more information, see: http://www.global-assess.rwth-aachen.de/testmaker-wiki
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EtnoFletno
A platform for sharing ethnomusicological content.
EtnoFletno is a mobile and web platform of Slovenian folk songs. The aim is to revive our connection with folk song and music, and use modern technologies to make it accessible for everyone. Available on all major mobile platforms and web browsers, EtnoFletno offers standard search and browsing, as well as more advanced features, such as melody based search and query-by-humming. Developed in partnership with the Laboratory for Graphics and Multimedia (University of Ljubljana, Faculty of... -
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Peklo is a graph editor and an environment for visualizing and comparing different algorithms for some graph-theoretic problems, e.g. flows, shortest path, minimum spanning tree.
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This project will produce a set of machine measures of text document similarity. A measure of document similarity quantifies the degree to which two text documents are related.
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Sequencia
Protein Primary Sequnece Analysis
The current work is focused on the Software Development of an Offline Tool for “PRIMARY-SEQUENCE ANALYSIS” with JAVA and open source resources. SEQUENCIA Tool is an offline Tool of Primary Sequence Analysis, which is quite prevalent Topic for Researchers all over the world. Sequence Name, Sequence Length, Absorbance, Net charge, Iso electric charge, Amino acid composition, Amino acid classification, Aliphatic Index, Instability Index, Average Hydropathy etc are the Primary Sequence Analysis... -
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AlloyMDA
MDA support for Alloy
This project intends to develop tools to enable MDA support for the formal modeling language Alloy. -
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Identifiers.org is a system providing resolvable and persistent identifiers, in the form of URIs, used to identify data for the scientific community, with a current focus on the Life Sciences domain. The provision of resolvable identifiers (URLs) fits well with the Semantic Web vision, and the Linked Data initiative. The resolving services of Identifiers.org rely on the information stored in the MIRIAM Registry.
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ParDRR-MPI
Parallel Duplicate Read Remover with MPI
ParDRR-MPI is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. It is faster than multithreaded counterparts (end of 2015) for the... -
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The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
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ExAM-Exome_Analysis_And_Mining
A whole exome sequencing analysis package and its graphical interface
During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,... -
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The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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The aim of the project VIF is to create a next generation discussion forum, i.e. a forum with extended functionality that makes it especially suitable to discuss complex and controversial questions. Thus, VIF can be used as 'knowledge factory'.
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SenseClusters is a suite of Perl programs that clusters similar written contexts using unsupervised methods. It supports its own native methods and Latent Semantic Analysis. It takes users from preprocessing of text to clustered output.
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mCarts
A hidden Markov model to predict clustered RNA motif sites
Many RBPs recognize very short and degenerate sequences, with targeting specificity achieved by mechanisms such as synergistic binding to multiple clustered sites and modulation of site accessibility through different RNA-secondary structures. mCarts integrates the number and spacing of individual motif sites, their accessibility and conservation, which substantially improves signal to noise ratio. This algorithm learns and quantifies rules of these features, taking advantage of a large... -
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The Ngram Statistics Package (ngram) is a suite of Perl programs that identifies significant multi word units (collocations) in written text using many different tests of association. NSP/ngram allows a user to add their own tests with minimal effort
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This package consists of Perl modules that implement the semantic relatedness measures of Leacock-Chodorow (1998), Jiang-Conrath (1997), Resnik (1995), Lin (1998), Hirst-St-Onge (1998), Wu & Palmer (1994), Banerjee-Pedersen (2002), and Patwardhan (2003).
