Search Results for "gnu science" - Page 74
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Showing 11016 open source projects for "gnu science"
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
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ICCS
Image Color Correction System
ICCS provides tools and methods for image color correction based on a color chart. This includes the color chart detection and several methods for image color correation using machine learning approaches. -
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GGNFS is an open source implementation of General Number Field Sieve algorithm for factoring integers.
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Takt
Text-based Music Programming Tools
Takt is a text-based language for describing note and chord sequences as well as algorithmic compositon rules with C-like syntax. This software package contains a REPL (read-eval-play loop) interpreter for Takt, a MIDI-file-to-Takt translator, and an Emacs interface program which enables note entry from a MIDI keyboard. -
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GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
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GENFIT has been moved to github: https://github.com/GenFit/GenFit GENFIT - a generic track reconstruction framework for nuclear and particle physics
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IM-TORNADO
Illinois Mayo Taxonomy Operations for RNA Database Operations
IM-TORNADO HAS MOVED TO GITHUB: https://github.com/pjeraldo/imtornado2 Pipeline for analysis of paired-end 16S rDNA amplicon data. -
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FieldTrip
The MATLAB software toolbox for MEG and EEG analysis
FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis. -
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PHPlot
A PHP class for creating graphs, plots, charts
PHPlot is a PHP graphics class for creating charts and plots. It works with PHP5 and the PHP GD extension to produce PNG, GIF, or JPEG images. TrueType fonts (TTF) are optional, or built-in GD fonts can be used. The available plot types include: area, bars, line/points, lines, pie, points, squared, stacked-bars, and thin bar-line. Labels, tick marks, plot legend, and X/Y axes and more are all configurable. Images can be imported as a background, multiple graphs can be drawn on one image,... -
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SFS_CODE (Selection on Finite Sites under COmplex Demographic Events) performs forward population genetic simulations under a general Wright-Fisher model with arbitrary demographic, selective, and mutational effects.
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This software searches the potential energy surface of small to medium size atomic systems for global minima using quantum ab initio techniques. It performs bond rotations and molecule translations and rotations on a Linux cluster with MPI.
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quickplot
interactive 2D plotter
Quickplot is a fast interactive 2D plotter with infinite zooming, value picking, pipe input, and unlimited plots displayed. Quickplot is meant for looking at your data quickly and of secondary importance is making static pictures of your data. -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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Biorec - Bioreactor controller
Bioreactor control software for BioFlo® fermentors
Biorec is an open source control software written for Windows operating systems to provide data logging, process monitoring and control for pilot and laboratory scale BioFlo® series (Eppendorf AG, Hamburg/Germany) fermentors/bioreactors. The supported models are BioFlo® III and BioFlo® 3000 (other models have not been tested in action). Biorec supports process automation through a user programming environment that allows controlling pumps, temperature or agitation by mathematical... -
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The Maude Development Tools are a set of plugins that embed the maude interpreter (http://maude.cs.uiuc.edu) in Eclipse. It provides a core plugin, which allows to any Java program to use Maude, and a set of plugins which provide an Eclipse-based IDE
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Polynomial Interpolation
Polynomial interpolation
Interpolation polynomial in the Newton form and use the method of divided differences -
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An urban air pollution model based on the mass-conservation principle and the advection-diffusion equation. A technical report R-207-2012 can be found in http://www.nies.go.jp/kanko/kenkyu/index-e.html
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Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.
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WiiGesture for Fex/AIR
Allows inclusion of Gesture Interaction via WiiMote in Web-Apps
WiiGesture is a library to add gestural interaction in web-applications that are based on Adobe Flash/Flex/Air. Therefore it uses the WiiFlash service (http://wiiflash.bytearray.org/?page_id=50) to retrieve the sensor data and an internal algorithm based on template matching recognizes performed gestures in real-time. For easier gesture training, a so called WiiGesture-Learning desktop tool was developed that automatically generates gesture templates by performing gestures with at least... -
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Folder
Toolbox for modelling deformation in layered media in 2D
Folder is a tool to simulate and analyse the development of structures in mechanically layered media during layer parallel shortening or extension. It includes a graphical user interface that allows for easy designing of complex geometrical models, defining material parameters (including linear and non-linear rheology), and specifying type and amount of deformation. It also includes a range of features that facilitate the visualization and examination of various relevant quantities e.g.... -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific... -
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Explore InSAR data and more
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PyRadmon Reborn
PyRadmon, a Python script to use on both Linux and Windows.
PyRadmon Reborn. This project started after the original programmers quit supporting it. The project now contains support for audio*, has a version that supports two Geiger counters** and a cleaner, more stable code. * = PyAudio is used as library for the audio support. ** = The two counters both run in their own thread. UPDATE-2015-2: * Added timeouts to sockets to prevent crashing of the script. * Updated some comments. UPDATE-2015-1: Since there have been some passed time... -
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Semantic MediaWiki
Lets you store and query data within the wiki's pages.
Semantic MediaWiki is an extension to the MediaWiki software (powering Wikipedia), which extends the Wiki with ideas from the Semantic Web. We focus on usability and tight integration. See the web site for further details and GitHub at https://github.com/SemanticMediaWiki/SemanticMediaWiki/releases for the file releases! (since version 2.4.0). -
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Collaborative infrastructure for Collaborative Product Development (manufacturing) within Extended and Virtual Enterprise.
