Showing 11016 open source projects for "gnu science"

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  • 1
    Several RNA and protein structure volume calculation tools.
    Downloads: 1 This Week
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  • 2
    BioDWH: Bioinformatics Data Warehouse
    BioDWH is a bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local RDBMS. It provides up-to-date integrated knowledge, platform and database independence.
    Downloads: 0 This Week
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  • 3
    G4LTL-ST

    G4LTL-ST

    Generating PLC programs from formal specifications

    G4LTL-ST is a standalone tool and a Java library for automatically generating industrial control software (supporting IEC-61131-3 Structure Text) from LTL or extended logic specifications. See Tutorial.txt inside the package for step-by-step instructions. For technical demails, see CAV'14 paper "G4LTL-ST: Automatic Generation of PLC Programs". The old version (G4LTL; under BSD license) is available under file\arxiv.
    Downloads: 0 This Week
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  • 4
    OpenCCG, the OpenNLP CCG Library, is a collection of natural language processing components and tools which provide support for parsing and realization with Combinatory Categorial Grammar (CCG).
    Downloads: 2 This Week
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  • 5
    SHORE is a Next Generation Sequencing data analysis suite. Please find the manual at http://shore.sourceforge.net/wiki
    Downloads: 0 This Week
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  • 6
    JReliability allows to derive several reliability-related measures like Mean-Time-To-Failure (MTTF) or Mission-Time (MT) of complex systems that are modeled using Boolean functions, efficiently encoded in Binary Decision Diagrams (BDDs).
    Downloads: 0 This Week
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  • 7
    hyperGK

    hyperGK

    Gauss-Kronrod quadrature on several variables.

    hyperGK is a collection of C++ classes for parallelized numerical integration on several variables. The integrations are performed using Gauss-Kronrod quadrature. hyperGK is inspired and, to some extent, based on Quadpack, but generalized to multiple integrals on either rectangular regions or more general regions. This package is still under development. Usage examples can be found in the demonstration subdirectory.
    Downloads: 0 This Week
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  • 8
    Today’s science is done modelling and simulating the experiment or the inter- ested physics phenomena on computers first. These simulations give impressive results and accuracy, showing us what the experimental results will actually look like. We believe that a similar approach, in which the studied phenomena is simplified down to its essential core and then modelled on a computer, can be very useful in education. Alongside this, presenting also a graphical representation of the phenomena to...
    Downloads: 1 This Week
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  • 9

    runjags

    The 'runjags' R package and standalone JAGS extension module

    This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A...
    Downloads: 1 This Week
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  • 10
    VibroToolbox is a tool for research and education in vibrometry. Test your audio equipment, describe responses to vibratory stimulation and analyze directionality. It works with precision i/o hardware or simple sound cards, various sensors and speakers.
    Downloads: 0 This Week
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  • 11
    LOOS

    LOOS

    Analyze molecular simulation data

    LOOS is a light-weight object oriented software library for creating new tools for analyzing molecular simulation data, written in C++. The main design goal is to allow casual programmers to easily implement new analysis methods. THIS PAGE IS NO LONGER UPDATED. Please see https://github.com/GrossfieldLab/loos for all recent developments
    Downloads: 0 This Week
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  • 12
    Downloads: 0 This Week
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  • 13
    An open-source implementation of our network-based target deconvolution approach, named target addiction score (TAS). License: The TAS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. This software is distributed in the hope that it will be useful, but WITHOUT ANY...
    Downloads: 0 This Week
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  • 14

    Penguin Nest Picture Analyser

    Penguin Nest Camera Analyser - program for aiding the counting of peng

    Penguin Nest Camera Analyser - program for aiding the counting of penguins in images created by automated nest monitoring cameras.
    Downloads: 0 This Week
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  • 15
    FalansterCity3D

    FalansterCity3D

    3D urban environment renderer : browser-app ; as well as a GTA clone

    Have You ever wondered what would be like the weirdest Grand Theft Auto clone ever made? Well, we are pretty close with the FalansterCity3D urban environment rendering-engine where You can also drive the cars in the city. And moreover, it's a browser-game, so it runs instantly in any internet-browser. Why not try it directly at the link below? http://nerdofalgorithms.altervista.org/secondary_pages/page_11.php Even on smarthones or whatever, as long as it has a browser and sufficient...
    Downloads: 0 This Week
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  • 16
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 0 This Week
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  • 17
    What is MedSquare about? Our aim is to create a powerful and flexible modular environment for exploration of medical images, for both medical and scientific purposes.
    Downloads: 0 This Week
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  • 18
    tranci

    tranci

    Calculate electronic properties of transition metal atoms

    Computational package to study transition metal atoms in surfaces, focusing on the effects of crystal field, spin orbit coupling and electronic interactions. Inputs are written in an user friendly interface, and creates a pdf and graphics with the results.
    Downloads: 0 This Week
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  • 19

    CPU Hot Plugging

    A program that can plugging CPU core

    CPU Hot Plugging (chp) is created by Kafabih (kr code) inspired by Thunderzap android custom kernel cpu governor to reduce battery consumptions because of your laptop CPU usages. Please use carefully, chp can cause system crash or hang because of hot plugging cpu core.
    Downloads: 0 This Week
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  • 20
    WavePacket

    WavePacket

    Dynamics of quantum systems, controlled by external fields

    WavePacket is a toolkit for numerical simulation of distinguishable particles. It can solve single or coupled time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations, as well as classical or quantum-classical Liouville equations. External electric fields can be added within the semiclassical dipole approximation, thus WavePacket can be used to simulate modern experiments involving ultrashort light pulses in photo-induced physics or chemistry, including...
    Downloads: 0 This Week
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  • 21
    KAnalyze

    KAnalyze

    DNA/RNA Sequence K-mer Toolkit

    KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API.
    Downloads: 0 This Week
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  • 22

    Al-Kashi

    PHP package for statistical functions

    We aim in Al-Kashi project to provide a rich PHP package full of statistical functions useful for online business intelligent and data mining, possible applications may include an online log file analysis, Ad's and Campaign statistics, or survey/voting results on-fly analysis.
    Downloads: 0 This Week
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  • 23
    Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
    Downloads: 3 This Week
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  • 24
    Opt4J

    Opt4J

    Modular Java framework for meta-heuristic optimization

    Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary...
    Downloads: 1 This Week
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  • 25
    Plotdrop

    Plotdrop

    minimal GUI for gnuplot

    Plotdrop is a minimal GNOME frontend to gnuplot PlotDrop is designed for quick simple visualisation of 2D data series. It is not intended to encompass anywhere near the full capabilities of gnuplot. Code can be found at: http://github.com/laserjock/plotdrop
    Downloads: 2 This Week
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