Showing 11014 open source projects for "gnu science"

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  • 1
    ExpTimer

    ExpTimer

    An easy-to-use timer to facilitate complex, multi-step protocols.

    ExpTimer is developed as an easy-to-use timer to facilitate complex, multi-step experimental protocols. The advantages of ExpTimer are that it takes away the fiddling around with typical lab timers, which have to be reset after each action, and at the same time it shows you what to do next. You just enter your own protocol, press “start” and you do not have to worry about timers anymore, especially when you already have your hands full with your protocol. If something goes wrong during your...
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  • 2
    TreeGraph

    TreeGraph

    Information Manager(split/analyze/compare/combine).

    For Homepage, Blog, Family Tree, Database, C#|hjt|js|chm Editor. Convert hjt2xml, (c#)cs2xml, chm2xml, js2xml, xml2cs, xml2js, xml2hjt, cs2hjt, hjt2cs, cs2chm, hjt2chm. IE/Opera/Firefox/PocketPC supported.
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  • 3
    MSSuite
    Tools for MassWiz add-ins and pre- and post-database search analyses programs. It houses FlexiFDR, ProteoStats and ProteomeAnalyst. https://pubs.acs.org/doi/abs/10.1021/pr200031z Check out the wiki site for help and support - https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=Main_Page
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  • 4
    Gaol: NOT Just Another Interval Library Gaol is a C++ library for interval arithmetic. It is supposed to be a fast and easy to use/modify library for anyone interested in assessing interval arithmetic merits or using it on a regular basis. WARNING: starting October 2016, the new location for GAOL is http://frederic.goualard.net/#research-software. Sourceforge and the Sourceforge Subversion repository will no longer be used.
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  • 5
    Abaqus implementation (through UEL subroutine) of the incremental energy/dissipation based arc-length method. Suitable for physically non-linear, geometrically linear solid mechanics problems solved through an implicit solution algorithm. The zip file includes a read-me pdf giving information about how to use the files. The details are presented in the following paper : Author : İ. Özdemir 'An alternative implementation of the incremental energy/dissipation based arc-length control...
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  • 6
    Virtual Reality Modeling Language
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  • 7
    SoundComp
    A compiler library for a language integrating all that is needed for completely defining whole sound/music compilations. From very basic stuff as defining oscillators etc in all their parameters up to note events and more.
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  • 8
    MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
    Downloads: 13 This Week
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  • 9
    Virtual Laboratory Environment

    Virtual Laboratory Environment

    A multi-modeling and simulation environment to study complex systems

    VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical...
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  • 10
    A command-line tool for numerical reconstruction of digital holograms (formerly known as "HoloPlay")
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  • 11
    The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
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    Downloads: 235 This Week
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  • 12
    Various planners, as released by planning researchers in the Planning, Agents and Intelligent Systems Group, Department of Informatics, King's College London. These include OPTIC, POPF, COLIN, CRIKEY3, LPRPG, Marvin and TSGP.
    Downloads: 2 This Week
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  • 13

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
    Downloads: 1 This Week
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  • 14
    Tissue Simulation Toolkit is a two-dimensional library for the Cellular Potts Model (Graner and Glazier 1992; Phys. Rev. Lett. 69, 2013), which is increasingly used by computational biologists to study tissue patterning and developmental mechanisms.
    Downloads: 1 This Week
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  • 15
    Scientech Minecraft Mod

    Scientech Minecraft Mod

    A Minecraft Mod for science and technology

    A simple Minecraft mod for Science and Technology. Technotype's first Minecraft mod. (alpha)
    Downloads: 0 This Week
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  • 16

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 17
    medSLT - The Medical Speech Translator
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  • 18
    SystemC Network Simulation Library (SCNSL) is an extension of SystemC to allow modelling packet-based networks such as wireless networks, ethernet, fieldbus, etc. As done by basic SystemC for signals on the bus, SCNSL provides primitives to model packet trasmission, reception, contention on the channel and wireless path loss. The use of SCNSL allows the easy and complete modelling of distributed applications of networked embedded systems such as wireless sensor networks, routers, and...
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  • 19
    FastFlow: programming multi-core

    FastFlow: programming multi-core

    Pattern-based multi/many-core parallel programming framework

    FastFlow is a C/C++ programming framework supporting the development of pattern-based parallel programs on multi/many-core, GPUs and distributed platforms. FastFlow run-time is built upon non-blocking threads and lock-free queues. Thanks to its very efficient CAS-free communication/synchronization support (e.g. few clock cycles core-to-core latency), FastFlow effectively supports the exploitation of fine grain parallelism, e.g. parallel codes managing very high frequency streams on...
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  • 20
    DQ Robotics
    DQ Robotics has been moved to GitHub. The SourceForge project will not be updated anymore. Please see http://dqrobotics.github.io.
    Downloads: 0 This Week
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  • 21
    GMOL

    GMOL

    A tool for 3D genome structure visualization

    GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
    Downloads: 4 This Week
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  • 22
    MoCalc2012

    MoCalc2012

    GUI for MOPAC, DFTB+, GAMESS, Firefly, NWChem, ORCA and PSI4

    MoCalc2012 is a simple, efficient Graphical User Interface for MOPAC, DFTB+, GAMESS(US), Firefly, NWChem, ORCA and PSI4.
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    Downloads: 17 This Week
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  • 23
    Sciatrope

    Sciatrope

    An application for eclipse chasers, by an eclipse chaser.

    Sciatrope is a Cocoa (macOS) application made by an eclipse chaser for eclipse chasers. It helps preparing for, and observe, any solar eclipse. It gives the eclipse circumstances, distance and direction to the central line. Observing location can be provided by the Mac, an external GPS, by location name, from a previously saved favorite location, or by latitude and longitude. Eclipse circumstances are displayed in tabular form, on a map, a compass, or in an image, with azimuthal or...
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  • 24

    OpenFlowChem

    Platform for laboratory automation based on Labview

    OpenFlowChem is a platform for quick automation of laboratory processes and experiments. The platform is described in a publication DOI:10.1039/C8RE00046H in details. Briefly, you have self-sufficient Device Monitors – programming units responsible for communication with a single physical unit – and a System Module – the high-level programs that send commands to the Device Monitors. In the files presented, you can download several Device Monitor for hardware as well as ample examples of...
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  • 25
    seqMINER
    A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
    Downloads: 5 This Week
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