Search Results for "reaction" - Page 4
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Showing 142 open source projects for "reaction"
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gpgmpi
An GPGMP in C++/OpenCL with improved time step algorithm
The need for speed is always a challenge for large-scale stochastic simulation. This software is based on a parallel stochastic simulation algorithm already implemented on Graphics Processing Unit (GPU) for inhomogeneous reaction-drift-diffusion systems. We suggest an improved choice of time step which turns out to be almost 3 or even more times fast with nearly identical accuracy. The software is now completely implemented in C++ and OpenCL which only depends on boost library and GPU vendor’s... -
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Acuchem: A Computer Program for Modeling Complex Chemical Reaction Systems by Walter Braun and John T. Herron This project creates a Java user interface to create and convert input/output files from the Acuchem program.
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Balance reaction parameters
Parameter balancing for reactions of SBML models
This script balances the kinetic parameters of the reactions in a SBML model. Please read the README.txt file for any details. -
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Tree-Based Search SSA
Tree-Based search for stochastic simulation algorithm
An efficient tree-based search for stochastic simulation of biochemical reaction systems -
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Systems Glycobiology
Glycosylation Network Analysis Toolbox (GNAT)
GNAT is an open source, platform-independent MATLAB based toolbox. It is written in MATLAB and Java. It has been tested in Windows (Windows 7), Linux (Ubuntu), and Mac OS (X Lion) platforms. The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). The second version of this software (GNATv2beta.zip) upgrades the original GNAT program with additional... -
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Oscill8 is a suite of tools for analyzing dynamical systems which concentrates on understanding how the dynamical behavior depends on the parameters using bifurcation theory and reaction network theory.
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VistA Data Loader
.NET tool to load patient data into the Dept. of VA's VistA EHR.
The VistA Data Loader 1.0 is used to add data to training, demonstration, and test instances of the Department of Veteran Affairs VistA EHR (VistA). The Data Loader can insert data into the following VistA packages: Adverse Reaction Tracking (allergies) package Appointment/Scheduling package Consult/ Request Tracking package Laboratory package Outpatient Pharmacy package Problem List package Radiology package TIU (Text Integration Utility) package Vitals package -
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pushover
Clone of the 1992 video game
This is a puzzle game where you have to manipulate dominos that they all fall in a chain reaction according to certain rules. https://domino-chain.gitlab.io/ -
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...: Synthesis-Decompostion Reaction Chain Reaction Nuclear Chemical Reaction Lodka Model Brusselator Model Furthermore, the Stochastic approach can be computed by several stochastic simulation algorithms. The DetStoch package offers four stochastic algorithms that use probability functions simulated via Monte Carlo methods: Gillespie's Direct Method, Gillespie's First Reaction Method, Bruck and Gibson Next Reaction Method and Tau-Leaping Method.
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tapcode
A program for practicing tap code hearing and writing
The tap code is similar to Morse code, only with taps. To be unambiguous letter by letter, a new code is needed. It is defined with this program. The program allows for learning it in hearing and writing. Only sound output and keyboard are needed. -
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SaltSoft
Program to simulate inorganic reactions and practice salt analysis
SaltSoft is a software to practice inorganic qualitative analysis. It can be used in 2 ways: 1. Carry out reactions: The reaction mode allow users to write a set of reactants and see what the products will be. Physical characteristics like color of precipitate formed and smell of gas evolved will also be displayed. 2. Practice: A salt will be randomly chosen by the computer. You have to make it react with things and guess what the salt is by analyzing the change in physical... -
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Easily find and extract specific chemical reactions from the BioModels database.
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"Pageturner", a program to automatically turn pages of sheet music while you play, or otherwise trigger pre-programmed events in reaction to sound.
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URDME is an efficent implementation of the next subvolume method (and other spatial stochastic algorithms) adapted to simulate the reaction-diffusion master equation on unstructured meshes.
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ComboBreaker
An original, addictive puzzle game.
Combo Breaker is an addictive, java based game which involves clearing grids of all objects by clicking on objects, and thus causing a chain reaction of all chained horizontal and vertical objects . Users are limited to X amount of moves per level. Users are also permitted to create their own levels! -
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SPSens
Stochastic parameter sensitivity analysis for chemical networks
SPSens is a complete software package written in C that estimates parameter sensitivities for stochastic models of chemical and biochemical reaction networks using Monte Carlo (MC) stochastic simulations. It is possible to estimate sensitivities with respect to system parameters using the following algorithms: finite difference methods (crude monte carlo, common reaction path, coupled finite differences); likelihood ratio methods; and regularized pathwise derivatives. Additionally the package... -
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SymposiumPlanner-2012
Conference Management System
SymposiumPlanner is a distributed rule-based semantic agent system for supporting the RuleML Symposia by coordinating personal agents that assist the symposium chairs, answering questions from participants interested in the symposium. Distributed rule agents in Symposium Planner 2012 are implemented as Prova agents and OO jDREW agents which communicate via the Reaction RuleML interchange standard. Symposium Planner 2012 consults the knowledge not only from its semantic knowledge repository... -
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Building controls often have a PID Loop (Proportional Integral Derivative). Adjust PI&D terms in realtime and visually see what the reaction to the system will be. This is a real-time simulator with speed adjustment. Software requires the old MS Java Machine to run. Interested in an updated desktop version? Please drop me a note in the forum or my blog: http://right-handed-monkey.blogspot.com/
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ezBioNet is a biological modeling and simulation tool of molecular interaction that occurred in a cell. We aim that this software can be used for collecting biological data and making biological models to simulate it by biological researchers. ezBioNet can build a detailed biological model including signal transduction, enzyme kinetics, expression network, etc. It also support number of numerical analysis method to simulate the biological reaction networks.
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A little game based on a really old flashgame that i can't find again on internet. Just click on bubbles to make it explode and start a chain reaction to clean the grid.
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Chain Reaction is a game played on a rectangular field by setting stones causing chain reactions to oust the others from the field. This version works with gtkmm and lets you choose board size and player number. Networking support is planned.
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A high-performance simulation package for sampling the chemical and reaction-diffusion master equations. Primarily intended for running stochastic simulations of microbial cells.
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ActiveInsight provides real-time detection and reaction to events and patterns. It is a platform that enables the detection of meaningful events within multiple, high frequency, event streams.
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Algorithms that optimally & efficiently map atomic reactions. See 1) Atomic Reaction Mapping {Crabtree: amazon, b&n} 2) J. of Exp. Algorithmics, Vol 13 {Crabtree, Mehta} 3) J. Chem. Inf. Model., 2010, 50 (9), pp 1751–1756 {Crabtree, Mehta, Kouri}.