Search Results for "peak" - Page 3
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Showing 162 open source projects for "peak"
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DetectorCalibration
Peak and global efficiency of radiation source-detector equipment
This software uses Geant4 simulation toolkit for computing detector efficiency in terms of peak efficiency and gross efficiency. It is designed mainly for gamma detectors (NaI or HpGe) but can be extended for beta or any other radiation type. Radiation source can be frontal beam, point source, Sarpagan baker (cylinder) and Marinelli baker. Due to the nature of Monte Carlo simulation technique, all geometries involved must be well known for accurate results! Can be used along... -
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OpenChrom is a tool for gas chromatography and mass spectrometry. The focus is to handle data files from different GC/MS and GC/FID systems and vendors. Its functionality and algorithms can be extended using a flexible plugin approach, based on Eclipse RCP.
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MysticBBS Shoutcast Panel
Python Script for Mystic BBS Shoutcast Dashboard
This script was created so I can display various information to my BBS users about my shoutcast radio stream. This BBS section includes a shoutcast dashboard with station information obtained via RSS/XML. The display includes listener peak, current song playing, next song to play, stream status, stream URL and other pertinent information for the BBS user to see. After the dashboard is displayed, the script continues by showing the last 20 songs played on the station. Useful things... -
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AI learning
AiLearning, data analysis plus machine learning practice
..., and online earning community, with a QQ group of more than 10,000 people and at least 10,000 subscribers. The number of Github Stars exceeds 60k, and it ranks in the top 100 of all Github organizations. The daily up of all its websites exceeds 4k, and the peak of Alexa ranking is 20k. Our core members are certified as CSDN blog experts and short-book programmers as excellent authors. We have established ApacheCN, a non-profit document, and tutorial translation project. -
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Canvas-2DGC
A user-extensible Freemat based 1DGC and GCxGC data analysis software.
Canvas-2DGC is a user-extensible, Freemat based 1DGC and comprehensive 2DGC (GCxGC) data visualization and processing software. GCxGC-MS data analysis is supported for Agilent GCMS data format. The first goal of this project is to provide a highly intelligent analytical tool for reducing a complex chromatographic data analysis, either 1D or 2D, to just a few simple and intuitive steps. The second goal is to provide a fast and practical way of customizing or extending functionalities... -
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... be utilized for any -omic platform. We have shown its utility in LC-MS/MS and metabolomics in the following two papers: 1) PMID: 19602524. "Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition". Karpievitch YV, Taverner T, Adkins JN, Callister SJ, Anderson GA, Smith RD, Dabney AR. Bioinformatics 2009 2) "Metabolomics data normalization with EigenMS" Karpievitch YV, Nikolic SB, Wilson R, Sharman JE, Edwards LM. PLoS One 2014
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datasw
datasw, a tool for rapid processing of HPLC-SAXS data.
Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS... -
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WaveShop
Fast, bit-perfect audio editor that doesn't modify samples needlessly
WaveShop is an audio editor for Windows XP/Vista/7/8. Unlike many similar apps, WaveShop is bit-perfect, meaning samples aren't altered unless they need to be. Editing a portion of an audio file only affects that portion; the rest of the file is untouched. Blocks of audio can be cut and pasted without changing their contents at all. This is especially useful for patching a finished master without corrupting its dither. -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data... -
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INFOS
NMR spectrum fitting software
NOW COMPILED FOR USERS WITHOUT A MATLAB LICENSE! Download INFOS_comp_***.zip. INFOS is a set of programs for fitting NMR spectra in MATLAB. INFOS improves on existing methods by calculating peak shapes using acquisition and processing parameters, therefore leading to better fits. Additionally, INFOS can determine the peak list for fitting, by using iterative refinement of the list in order to improve the fit without overfitting. INFOS also can be used to analyze error of fit parameters, can... -
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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Appz
Launch external apps, and deeplink, with ease using Swift
... increase. Therefore, each supported app is implemented in isolation in a separate file. The API has been carefully designed to make the most out of auto-complete features, so you don't even have to peak into any docs or code! To make the specs as transparent as possible, the library has tests to make sure every external application action has tests with the expected results. -
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OpenGamma is a tool for gamma-ray spectrometry. It performs spectra analysis, including peak search, radionuclide identification and radioactivity determination in samples, allowing full user-defined customization and parameters setting.
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Ever wanted to iterate through a range of Apex LE and HE setting to see what gives you the best answer? PLGS Threshold Inspector lets you do that.
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BMDExpress Data Viewer
A Visualization Tool to Analyze BMDExpress Datasets
... tool to visualize, explore and analyze BMDExpress output files. Visualizing the data in this manner enables rapid assessment of data quality, model fit, doses of peak activity, most sensitive pathway perturbations and other metrics that will be useful in applying toxicogenomics in risk assessment. Tool Link: http://apps.sciome.com:8082/BMDX_Viewer/ Publication Link: http://onlinelibrary.wiley.com/doi/10.1002/jat.3265/abstract -
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The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
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ScreenPeaker
Shows the master peak value info of the default recording device.
Shows the master peak value information of the default recording device in real-time, as the opacity of an image. Requires: .NET Framework 4.5 -
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CANStream
An applicaton for CAN bus coms development, testing and validation
... features of CANStream provide a comprehensive solution for testing and results analysis CANStream extensively uses the PCAN-Basic API developed by PEAK System for the PCAN-USB adapter You will therefore need to have PCAN-USB adapter and at least one free USB port available to make a complete use of CANStream. CANStream can manage up to eight PCAN-USB adapters at the same time, thus you will need eight USB ports available. -
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Kastor DSP (Radio Broadcasting Software)
(Alternative Broadcasting Software)
Kastor its an easy to use, streaming radio broadcasting tool. It supports ShoutCast and IceCast servers. The main purpose of Kastor is to stream live audio from your computers Mic or Line input with Shoutcast or Icecast servers. Recording is also possible,unlike other source clients it will automatically stream a set of audio files if it is setup that way. Kastor DSP features an internal mp3 player, a recorder and a minideck to mix down audio input from soundcard directly or through a... -
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Ionwinze
Spot the differences between samples, groups and classes
... of specific metabolites which may show up only as very small peaks. How would it be possible to spot an important metabolite or two, from 1000’s that occur in cells and tissues? If those truly relevant metabolites were missed during peak-picking then the following stats, however sophisticated they may be, would fail. And how many peaks are there in a single LCMS run? How can the important metabolites be represented in the top 100 or even 10000 peaks? This project tries to address these issues. -
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ChelomEx
Isotope assisted discovery of metal chelating agents from LC-MS data
ChelomEx identifies chromatographic features of metal complexes and associated free ligands or other related adducts in high-resolution LC-MS data. A built-in graphical user interface and compound library aid in the efficient evaluation of the results. If you use ChelomEx for your research, please cite our Analytical Chemistry paper that describes the software (http://dx.doi.org/10.1021/ac503000e). To comment, send bug reports or suggestions for additional features to be implemented... -
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Ritornello
Control free ChIP-seq peak caller
Ritornello is a ChIP-seq peak calling algorithm based on signal processing that can accurately call binding events without the need to do a pair total DNA input or IgG control sample. This project has moved to github as follows: https://github.com/KlugerLab/Ritornello -
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This is an R package for the Mass spectrometry Research. The MrR can be used to analyze the mass spectrometry data for baseline correction, denoising, peak detection, peak alignment, peak normalization, and biomarker discovery.
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RDA Toolbox
MATLAB tool for analysis of Raman spectra.
Provides principal component analysis, discriminant analysis, peak analysis, and clustering tools powered by MATLAB in an easy-to-use interface for the interpretation of Raman spectroscopy data.