Search Results for "matlab code for pca" - Page 2
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Showing 283 open source projects for "matlab code for pca"
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ASALI
ASALI is an open-source code for chemical engineers
Do you work with chemical reactors? Are you curious about them? ASALI is the open-source code that you are looking for. Chemical reactor models, transport/thermodynamic properties of gases, equilibrium calculations. ASALI couples all these features with an user friendly graphical interface. Modeling chemical reactors has never been so easy. -
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CyberUnits
Class library for computational cybernetics
CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal. -
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StringTemplate-for-Octave
Interface for GNU Octave/MATLAB with StringTemplate V4 template engine
This project provides a generic interface for GNU Octave with Terence Parr's popular StringTemplate V4 template engine; MATLAB is supported, too. The concept is simple. An Octave script wraps your data in suitable Java collections, so that deeply nested data structures can be passed to the template engine just like that - and without the need for a compiled Java interface class, as it would when directly building on Octave's generic Java interface to access StringTemplate. A major sample... -
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affe
apple fruit feature extractor (affe)
The apple fruit features extractor (affe) is a tool for feature extraction in apple phenotyping under the GPL 3 license https://opensource.org/license/gpl-3-0 It works on data of the Fruitphenobox https://www.researchsquare.com/article/rs-2632704/v1 Developed and tested by Norbert Kirchgessner, ETH Zurich using Matlab 2018b as source code and compiled For the generation of fact sheets, some R skripts written by Marius Hodel, Agroscope Wädenswil, Switzerland, are included. If you find... -
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ArchCUT3-D
ArchCUT3-D: 3-D Analysis of Incised Archeological Surfaces
... technique variation in rock engravings: ArchCUT3-D for micromorphological analysis. Humanities and Social Sciences Communications, 10(1), 316. https://doi.org/10.1057/s41599-023-01742-7 Dubinsky, L., & Grosman, L. (Submitted). Techné of Rock Engravings –the Timna Case Study Click Download (green button) to install. For advanced users, the open source MATLAB code is available at the following link: (https://drive.google.com/drive/folders/12pK-JoLcU4cN2zGFNh5oF7_J-mAnBd4z?usp=share_link) -
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Spheroid_segmentation
Deep learning networks for spheroid segmentation
To accelerate the analysis of tumors' spheroids, different deep learning networks were trained to automatize the segmentation process. The code provides the trained networks based on Vgg16, Vgg19, ResNet18, and ResNet50 ready to be used for segmentation purposes. It also provides Matlab functions ready to be used to train new networks, segment new images, and measure the quality of the training using different quantitative parameters. -
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kotlinLab
A MATLAB-like scientific programming environment for Kotlin and Java
The KotlinLab environment aims to provide a MATLAB/Scilab like scientific computing platform that is supported by a scripting engine of the Kotlin language. The KotlinLab user can work either with a MATLAB-like command console, or with a flexible editor based on the rsyntaxarea component, that offers more convenient code development. KotlinLab supports extensive plotting facilities and can exploit effectively a lot of powerful Java scientific libraries, as JLAPACK , Apache Common Maths , EJML... -
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SPM+hMRI standalone
A standalone version of SPM already packaged with the hMRI toolbox.
This archive contains a Linux compiled version of SPM12 (Statistical Parametric Mapping - https://www.fil.ion.ucl.ac.uk/spm/; source code available on GitHub: https://github.com/spm/spm12) together with the hMRI toolbox (https://github.com/hMRI-group/hMRI-toolbox). The purpose of this archive is to provide a standalone version of hMRI that does not rely on MATLAB and that can be used to create containerized workflows. This archive is released under the GNU General Public License (GPL). -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later... -
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Virtual Reflectometer
Simulates basic reflectometer scans with X ray tracing.
With Virtual Reflectometer (VR), you can simulate the basic alignment scans of a basic X ray reflectometer (diffractometer) with a Goebel mirror using ray tracing. With this program, you can characterize reflectometers and get a reflectometer-dependent overillumination correction for X Ray Reflectivity (XRR) scans. The pogram serves as an educational tool for explaining alignment and for a proper overillumination correction of XRR data. !!Paper will be referenced!!. VR can be run by code... -
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RenewNet Foundry
Building blocks for the renewable energy industry.
RenewNet Foundry is a repository for an integrated set of simulation components for system simulation of wind, wave and tidal energy systems. -
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IdleX - IDLE Extensions for Python
IDLE Extensions
A collection of extensions for Python's IDLE, the Python IDE built with the tkinter GUI toolkit. -
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I Heart LA
Compilable markdown for linear algebra
I Heart LA is a compilable markdown for math. It can generate working code in your favorite language (C++, Python, MATLAB, more to come) and LaTeX from snippets. -
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Scala3Lab
A MATLAB like environment for Scala 3
The Scala3Lab project aims to provide an efficient scientific programming environment for the Java Virtual Machine. The scripting language is based on the Scala3 programming language enhanced with high level scientific operators and with an integrated environment that provides a MATLAB-like working style. Also, all the huge libraries of Java scientific code can be easily accessible (and many times with a more convenient syntax). The main potential of the Scala3Lab is numerical code speed... -
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Xmaldi
Viewing collections of MALDI spectra and perform PCA and DFA analyses
Xmaldi is an application for viewing collections of MALDI spectra and perform PCA and DFA analyses on them (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/xmaldi3/code/ci/default/tree/README.md -
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PsyExTool
psychophysical experiment control, data collection and visualization
PsyExTool is a Psychophysical Experiment Toolbox in Matlab/Octave dedicated to control experiment, collect and visualize data. PsyExTool is aimed to create a tool that enables to couple the methods with visual or audio stimulus presentation modules. At present the program allows to use adjustment, constant stimulus and adaptive PSI psychophysical methods. The parameters of the stimulus and psychophysical method is adjusted in a single graphical user interface. The responses are collected... -
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Hierarchical DP
Source code of DC-HDP
This Matlab code is used for demonstration of the clustering results of DP, LC-DP and DC-HDP. Written by Ye Zhu, Deakin University, May 2021, version 1.0. This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Jin, Y. and Angelova, M., 2021, August. Hierarchical clustering that takes advantage of both density-peak and density-connectivity. Information Systems. The preprint... -
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vbTRACK_2D
Bayesian analysis of 2D(x,y) time series particle tracks using Matlab.
Matlab program analyzes 2D (xy) time-series data (tracks) by variaional Bayes, hidden Markov, Gaussian mixture pattern recognition pattern recognition methods. It finds the number of states, the position of each state, and assigns each time-point to its most probable specific state. -
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vbtrack
Divide single particle tracks into Brownian and motor-driven intervals
vbtrack is a software package for dividing organelle or particle tracks into Brownian and motor-driven intervals by variational maximization of the Bayesian evidence. Either particle velocity or directional persistence can be used to detect the number of states and the characteristics of each state at each frame of a particle track. -
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chethermo
Software for Introductory Chemical Engineering Thermodynamics
..., then use the 'Code' link and look in the 'trunk' folder for the main development and 'branches' for any side projects. Please note that the 'Files' releases are periodic, and that the 'Code' files may contain development files or code that is different from the 'Files' content. -
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AmPEP and AxPEP
Sequence-based Antimicrobial Peptide Prediction by Random Forest
Antimicrobial peptides (AMPs) are promising candidates in the fight against multidrug-resistant pathogens due to its broad range of activities and low toxicity. However, identification of AMPs through wet-lab experiment is still expensive and time consuming. AmPEP is an accurate computational method for AMP prediction using the random forest algorithm. The prediction model is based on the distribution patterns of amino acid properties along the sequence. Our optimal model, AmPEP with 1:3... -
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DCT
Diffraction Contrast Tomography analysis code
Diffraction contrast tomography code base, as developed by researchers from beamline ID19 of the ESRF, Grenoble, France, and Manchester University, UK. -
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This Matlab code is used for demonstration of the effect of CDF-TS as a preprocessing method to transform data. Written by Ye Zhu, Deakin University, April 2021, version 1.0. This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Carman, M. and Angelova, M., 2021, April. CDF Transform-and-Shift: An effective way to deal with datasets of inhomogeneous cluster densities. Pattern...
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MATLAB code for Generalized Approximate Message Passing (GAMP). GAMP is a Gaussian approximation of loopy belief propagation for estimation problems in compressed sensing and other non-Gaussian problems with linear mixing.