Search Results for "throughput" - Page 18

CANGS DB is a user-friendly and stand-alone database tool for processing, analyzing and managing the high throughput sequencing data from 454 amplicon resequencing projects. CANGSDB is very easy to use; it could be installed and used on any UNIX based computer to handle individual as well as multiple sequencing projects. It provides full-fledged flexibility with various options in raw sequence processing and analysis. CANGS DB provides a very powerful data retrieval interface, which enables researchers to retrieve sample information and primers and barcodes information from any individual data set or from a combination of data set. ...

Juggernaut is a high throughput out of core sequence assembly algorithm. This program is very useful in assembly projects involving massive number of short reads which originate from high coverage of the genome.

A processor architecture with a 300x improvement in energy per operation at 10x improvement in throughput, using low-energy circuits at the optimal balance point between delay and energy.

Yconalyzer is a low-overhead pcap utility that provides a bird's eye view of traffic on a particular TCP port, displaying a distribution of duration, volume and throughput over all connections while being able to narrow down to a connection as well.

NoiseMaker is a program that creates in silico simulated high throughput screening data sets for use in testing and selecting appropriate statistical techniques for quality determination and hit identification.

oTWLAN is a tool to simulate ad-hoc networks. The project facilitates throughput/delay performance study through a GUI based user interface. oTWLAN supports relaying, priority handling of user traffic and the data rates 100k, 1M and 10Mbps.

16s Ribosomal DNA analysis software. It includes a modified version of the Ribosomal Database Project's classification algorithm, as well as chimera detection. It is geared toward high-throughput classification of shorter, next-gen sequence data.

PIP on GT.M is a mature and proven complete FOSS stack for developing transaction processing database applications with superb scalability, transaction throughput & unique functionality for extreme levels of business continuity.

A (UTF-8) Chinese word segmentation program based on ngram language model. It is written in C++, provides multi-threading and high throughput.

Kelp is a desktop genome visualization tool and API intended for custom and locally stored numeric, annotation and sequence data such as generated by high-throughput sequencing and genome-wide assays (microarray, LD, chIP-seq, etc). Linux/OSX/Win, C++/Qt

iLAP is a workflow-driven information management system specifically designed to store laboratory data within its experimental context. It combines experimental protocol development, wizard-based data acquisition, and high-throughput data analysis.

fpsc is a Fast Parallel Stream Compressor. It can use multiple CPUs to compress (gzip or bzip2) a data stream. (from stdin to stdout) It is built to achieve maximum throughput, everything else (especially memory usage) can be sacrified.

MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.

Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage. ...

A simple intelligent cache for java. Simple to use, intelligent enough to learn by itself for best throughput. Exploit the 80/20 rule, 80% of time 20% of data is used. Can be used as a wrapper around other caching solutions, like ehcache, jcache etc.

BoneCP is a Java JDBC connection pool implementation that is tuned for high performance by minimizing lock contention to give greater throughput for your applications. It currently beats all known connection pools, including C3P0 and DBCP.

Extensible framework that enables productive design, analysis, and execution of arbitrary-sized neural-networks or system on a distributed, scalable, high-throughput runtime platform. Enables synapse-oriented-programming.

The cellular phenotype image (CPI) project aims to serve as a repository for many cell-based high throughput microscopy screens. Currently the project holds 5 experiments including 182412 movies and 191378 images.

LeafAnalyser has been developed as a fast throughput leaf shape analysis application. It contains features such as automated image processing, data analysis and interactive 2D/3D graphs.

The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.

Cyrille is an workflow management system aimed at high throughput pipelines in Bioinformatics.

ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).

Given a reference sequence, simhtsd will create a large set of short nucleotide reads, simulating the output from today's high-throughput DNA sequencers, such as the Illumina Genome Analyzer II.

The Usage Agent toolset is designed to help manage your ISP data usage without having to log into your ISP usage page. It can optionally monitor your network card throughput and produce reports on usage.

NetIcon is a utility that sits in the Windows task bar and shows your network throughput. Requires WinPcap. NetIcon was modeled after Process Explorer, which only shows the CPU and IO load. Additionally it shows a hilbert curve "netblob" diagram.