Search Results for "gnu science" - Page 16
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Showing 11014 open source projects for "gnu science"
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ParDRe
Parallel tool to remove duplicate DNA reads
ParDRe is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. It is faster than multithreaded counterparts (end of 2015) for the same... -
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XLibraryDisplay
A sequence analysis tool for protein engineering
XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s -
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Libro
An interactive program for statistical analysis of texts
A cross-platform text analysis program written in Python and Free Pascal/Lazarus which scans a whole text file (in plain text, HTML, EPUB, or ODT formats) and ranks all used words according to frequency, performing a quantitative analysis of the text using Shannon-Weaver information statistic and Zipf power law function. It counts words, sentences, chars, spaces, and syllables. Also computes readability indexes (Gunning-Fog, Coleman-Liau, Automated Readability Index (ARI), SMOG grade,... -
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TIPC Cluster Domain Sockets
Cluster wide IPC providing datagram, connection, and bus messaging
The Transparent Inter Process Communication service can best be described as a cluster wide equivalent to the Unix Domain Socket IPC, but with much more features. Go to http://www.tipc.io for more details. -
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Relations RCP is a personal wiki style application for knowledge creation and management. Its use is the visualization of terms and concepts and the relations governing these items. Relations is implemented as Eclipse RCP application.
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octave-ocl
OpenCL support for GNU Octave
The Package is installable in GNU Octave and offers OpenCL support for parallelization of numerical computations. It is most effective for computations which are based on large vectors or n-dimensional arrays of numbers, and mostly (but not limited to) identical element-wise operations. The user can select which available OpenCL hardware and drivers are to be used. The Package offers new numeric data types with many built-in operations (e.g., overloaded operators). It is flexibly... -
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QTPN
Visualization, electronic structure and multicomponent calculations
C/C++ code with GUI, supported on QT library for handling of windows and OpenGL/GLU for display of graphics. It is capable of dealing with plotting, electronic structure calculation and multicomponent calculations. Current version reads XYZ and deMon output files. Displays image of geometry, atomic orbitals, molecular orbitals, density and Fukui functions in a few different formats. In situ SCF Hartree-Fock calculations available. -
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dibnn
Drop In the Bucket Neural Networks
One more lightweight neural network in C. -
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Uranie
Uranie is CEA's uncertainty analysis platform, based on ROOT
Uranie is a sensitivity and uncertainty analysis plateform based on the ROOT framework (http://root.cern.ch) . It is developed at CEA, the French Atomic Energy Commission (http://www.cea.fr). It provides various tools for: - data analysis - sampling - statistical modeling - optimisation - sensitivity analysis - uncertainty analysis - running code on high performance computers - etc. Thanks to ROOT, it is easily scriptable in CINT (c++ like syntax) and Python. Is is... -
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QxCalc
QxCalc, a scriptable calculator
QxCalc For mathematical calculations in high-school, physics, chemistry, mathematics, economics, electrical, mechanical. Create equations, and also calculate with them, with ease. You use the calculator the same way as you use a pen and paper. It is quite simple, and can do a lot of work given syntax correctness. It comes with a "basic" gui, however the best way to use it is with the 'vim' editor, for which it has a syntax highlight file (calc.vim). -
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EChem++ is a software system based on an object oriented approach to electrochemical experimentation, simulation, and data analysis. Currently, development emphasis lies on the modelling and simulation as well as the analysis modules.
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Gemi
PCR primers / probes design from multiple & degenerate sequences
Please, do not hesitate to contact us if you need help. https://sites.google.com/view/hsa23/ Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large... -
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schur
Interactive Program For Calculating Properties Of Symmetric Functions
Schur is a standalone program for interactively calculating properties of Lie groups and symmetric functions. Schur has been designed to answer questions of relevance to a wide range of problems of interest to chemists, mathematicians, computer scientists,... -
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GluCat: Clifford algebra templates
Calculation with Clifford algebras: C++ library and Python module
GluCat is a generic library of C++ templates that implement universal Clifford algebras over the field of real numbers. The PyClical extension module for Python gives users an easy Python scripting interface for calculations in Clifford algebras. The name PyClical is an homage to Pertti Lounesto's CLICAL. -
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FractalImageCompression
Java Fractal Image Compression based on Delaunay triangulation
Implementation of the algorithm of the paper: "Fractal image compression based on Delaunay triangulation and vector quantization" It is a Fractal compression algorithm, based on relationships between regions of the image (in this case triangles), rather than in explicitly the pixel values themselves. Video... -
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MPIGeneNet
Parallel tool to construct gene co-expression networks
MPIGeneNet is a parallel tool to construct gene co-expression networks using Pearson’s correlation and Random Matrix Theory (RMT). This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). MPIGeneNet integrates the whole procedure of creating the in one program, which makes the tool easier to work with (the users only have to launch the... -
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NumeRe::Packages
The central package repository for NumeRe
This is the central repository for publicly available NumeRe packages. You can access the files in this repository either via SVN (see Repository tab) or directly with the built-in package repository browser. Using the repository browser, you can install packages with one click. If you like to add your package to the repository, please contact us using Discord: https://discord.gg/s5tSjwU -
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NeuronetExperimenter
NeuronetExperimenter simulates the activity of biological neurons
The NeuronetExperimenter software can be used to quickly simulate large sets of biological neurons arranged with arbitrary network connectivity. The software makes it easy to investigate the behaviors of large, complex, neural networks, especially when starting from XPPAUT models (http://www.math.pitt.edu/~bard/xpp/xpp.html). The software is very flexible and allows users to develop multiple neuron types with different constituent differential equations describing their behavior. Any of... -
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dockserver-talk
Python module to interface with a Slocum glider dockserver
Dockserver-talk is a python module that provides an easy way to build custom clients that communicate with Teledyne Webb Research's dockserver software, used to control "Slocum" underwater gliders. The package comes with two applications built on top of dockserverTalk: BUGS: a program to monitor and display the position of gliders (as well as buoys and ships) with respect to a given GPS location (from an external source). Surfalarm: a program that can send text messages or make... -
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Chaski App
Chaski is a content aggregator that helps you focus on what matters.
Chaski is a content aggregator designed to help you cut through the noise of today's internet. With its privacy-first approach, Chaski provides a simple, distraction-free space where you can consume the content that truly matters to you. Whether you're following articles, videos, or other online media, Chaski ensures you can access it all in one place—without the interruptions of ads, tracking, or irrelevant distractions. Key Features: Privacy-First: No ads, no tracking, and no... -
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Astrape
Optical-packet node transceiver frequency allocation
In an optical network scenario which consists of multiple nodes (whiteboxes) at its edges and ROADMs in-between, the coherent transceiver average laser configuration time is improved. The process is evaluated according to a testbed setup. This is facilitated in the appropriate lab equipment (or via simulation when required). For that purpose, a software agent (Netconf server) residing at the whiteboxes, is developed receiving input from the Software-Defined Networking (SDN) packet... -
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eval: command line calculator
Evaluate math expressions from command line or in interactive session.
Small (156 kB) command line calculator. Evaluate an expression directly from command line with eval <expr> command Example: c:\> eval 2+3 5 or in an interactive session. In a session, results may be assigned to unlimited number of variables and used in later calculations. Example: > x := 6+7 13.0000 >y := x*2 26.0000 Large number of elementary, special, trigonometric, hyperbolic and probability distribution functions are available. Number of decimal digits is defined by... -
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ASALI
ASALI is an open-source code for chemical engineers
Do you work with chemical reactors? Are you curious about them? ASALI is the open-source code that you are looking for. Chemical reactor models, transport/thermodynamic properties of gases, equilibrium calculations. ASALI couples all these features with an user friendly graphical interface. Modeling chemical reactors has never been so easy. -
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odaba
ODABA is an terminology-oriented database management system and develo
ODABA is an terminology-oriented database management system (TODBMS) on a high conceptual level. It provides a number of enhanced features based on natural language analysis. Terminology orientation allows designing user oriented data models. Enhanced event model and Active Data Link technology support rapid development of GUI applications. Several development, documentation, test and analyzing tools are provided in order to support developers and administrators. .NET interface and a... -
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belofte chess
A promising chess program
A console/text based chess program with XBoard/CECP and UCI API, available on all major platforms. You may need a graphical chess interface to use it. Please refer to README.md in the files section for installation instructions. The last stable release is 2.2.0 and has been released on 13/04/2026. Belofte 0.2.0 till 0.9.20 (c/c++): Xboard 1 & 2 (CECP) - Linux/Unix/(Windows) Belofte 2.1.1 and up (c++11) : UCI and Xboard 2 - Linux/Windows/Mac/Android/... For access to code, please...
