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You are using a very old version of SqlTool. There have been significant improvements to the area you are talking about.
The newer version's class is org.hsqldb.cmdline.SqlTool. For interactive interaction like you are doing, I suggest using the HSQLDB 1.9 distro.
2009-11-03 20:46:38 UTC in HyperSQL Database Engine
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unsaved committed revision 3203 to the HyperSQL Database Engine SVN repository, changing 1 files.
2009-09-16 13:29:24 UTC in HyperSQL Database Engine
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unsaved committed revision 3202 to the HyperSQL Database Engine SVN repository, changing 7 files.
2009-09-16 13:24:14 UTC in HyperSQL Database Engine
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unsaved committed revision 3201 to the HyperSQL Database Engine SVN repository, changing 15 files.
2009-09-16 13:03:08 UTC in HyperSQL Database Engine
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Understanding your sitation a little better, would it be acceptable, security-wise, if the CSV file momentarily appeared in ${java.io.tmpdir} (which physical directory varies widely depending on J2EE container)?.
2009-09-01 15:39:06 UTC in HyperSQL Database Engine
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... FYI, I realize there are several good reasons why this may not be an appropriate solution for you. Just checking one possibility...
2009-09-01 15:20:59 UTC in HyperSQL Database Engine
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As you are talking about distributing the CSV file in a jar file, we are talking about totally static data. Why don't you load the data at dev-time and distribute the seed database in your jar, thereby eliminating a significant chunk of runtime work and risk along with your CVS-on-CLASSPATH issue?.
2009-09-01 15:18:27 UTC in HyperSQL Database Engine
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I think the most likely cause is that Hibernate is not closing all database connections. Depending on how you are configuring Hibernate, the connection pooler will allocate a connection for data pooling control purposes, and I find that it doesn't close that connection. The HSQLDB shutdown property only takes effective when the LAST connection is closed, so in this case it will never run.
A...
2009-08-27 18:03:19 UTC in HyperSQL Database Engine
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unsaved committed revision 3118 to the HyperSQL Database Engine SVN repository, changing 1 files.
2009-08-20 18:32:14 UTC in HyperSQL Database Engine
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unsaved committed revision 3108 to the HyperSQL Database Engine SVN repository, changing 2 files.
2009-08-13 14:04:00 UTC in HyperSQL Database Engine