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is there a way to fuse one protein into another by connecting the N-and C-termini? I want to put a gfp model into a protein, and i have the residues of the protein i want the gfp to connect to, but i cannot seem to get them to align correctly manually. is there a script i can use to connect the gfp to the target area?.
2009-07-10 18:24:18 UTC in PyMOL Molecular Graphics System
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thanks! got it to work.
2009-07-10 02:37:13 UTC in PyMOL Molecular Graphics System
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Nevermind, I found out how to find the coordinate for my residue by centering the window on it and printing the coordinates that way. however, when i try to use the commands:
pseudoatom mysphere, pos[-57.613,30.485,48.506], vdw=[10.0]
it keeps saying that there is a value error due to an invalid literal for float. What does that mean?.
2009-07-08 20:25:22 UTC in PyMOL Molecular Graphics System
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How do you retrieve the coordinate information from PyMol? I have tried to use the tutorials, but they do not say how to get the coordinates for a single residue, nor how to display those coordinates in the command window. I am needing the coordinates for another script that will let me draw a sphere of a given size around the residue.
2009-07-08 18:41:37 UTC in PyMOL Molecular Graphics System
