Steffen Neumann

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  • metware

    sneumann added aeiwy to the metware project.

    2009-11-16 08:47:41 UTC in metware

  • metware

    sneumann committed revision 977 to the metware SVN repository, changing 3 files.

    2009-07-23 08:34:56 UTC in metware

  • Hook mechanism in isa-loader

    Hi, Upon upload the isaloader triggers (I guess) 1) the copying of files, 2) population of the RDBMS via hibernate and 3) the lucene indexing. I'd like to be able to specify a hook for certain uploads, such as 1) automatic conversion of vendor MS formats to mzData (or mzML or whatever) or 2) execution of a small shell script or 3) automagic peak picking via risatab/xcms Becaus we...

    2009-07-22 20:58:32 UTC in ISA infrastructure

  • creator and loader: allow data directories

    Hi, currently the ISA tools can handle/upload a single file per sample. Our Bruker MS stores the data in multiple files within a directory, see below. As mentioned during the visit, just for the records: I'd like to be able to select the directory MM48_MSMSpos_MH2_20_1-A,1_01_13444.d and have all the content in the ISAarchive. This applies also to other assays/vendors, see below...

    2009-07-22 20:44:34 UTC in ISA infrastructure

  • Fixed columns in spreadsheet

    Hi, If my spreadsheet gets larrge (huge!) I'll have a hard time figuring to which sample (or source) the Factor Value belongs, that I'm actually about to change. If I can right click on the Sample (or source, or whatever) colum and "fix" (or "always visible") it at the left, it will always be visible. Alternatively, you could add a similar Feature (maybe called "split" ?) that...

    2009-07-17 10:40:27 UTC in ISA infrastructure

  • Resolve filenames only on File Columns ?

    This will reduce clutter of the context(!) menu. Yours, Steffen.

    2009-07-17 10:36:47 UTC in ISA infrastructure

  • Re-apply highlighting after sorting

    Hi, after sorting, the highlighting is removed. I'd like it to stay, because I added it on purpose, and maybe performed the sort to have a better grasp at my (now sorted) samples. And if I don't wont it anymore, I can still use "remove highlight" Yours, Steffen.

    2009-07-17 10:35:11 UTC in ISA infrastructure

  • MultipleSort dropdown hidden

    Hi, when using MultipleSort, the drop-down list for the columns is hidden behind the multiplesort window, so you have to use the cursor keys to get to the desired entry ... This happens on windows and linux, jre sun-6 Yours, Steffen.

    2009-07-17 10:32:30 UTC in ISA infrastructure

  • Comment: Resizable modal popups

    Sorry, was a duplicate posting.

    2009-07-17 10:27:27 UTC in ISA infrastructure

  • Resizable modal popups

    Hi, I think the popups have to be resizable. Using e.g. the multiplesort I can see "Col10: Factor Value [Gro" and then it is cut off :-( Yours, Steffen.

    2009-07-17 10:26:05 UTC in ISA infrastructure

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