-
Hi Ben,
I am using version 0.11.3, I compiled it myself
scottc$ bowtie --version
bowtie version 0.11.3
32-bit
Built on scott.math.uci.edu
Mon Oct 12 16:52:57 PDT 2009
Compiler: gcc version 4.0.1 (Apple Inc. build 5490)
Options: -O3
Sizeof {int, long, long long, void*, size_t, off_t}: {4, 4, 8, 4, 4, 8}
I tried building an index of just the splice sequences, that works fine.
2009-11-02 18:26:27 UTC in Bowtie
-
I am working with some RNA-seq data and specifically trying to use the ERANGE pipeline for the analysis with bowtie as the mapper. The ERANGE pipeline has me create an "extended genome" which is essentially the normal genome plus short split sequences which are based on a known gene table and the length of my reads. This generated splice file contains a bunch of sequences like this...
2009-10-26 20:09:18 UTC in Bowtie
-
schristley committed patchset 7 of module example to the Narrative -- Cocoa Plotting Framework CVS repository, changing 5 files.
2008-10-19 06:18:18 UTC in Narrative -- Cocoa Plotting Framework
-
schristley committed patchset 14 of module narrative to the Narrative -- Cocoa Plotting Framework CVS repository, changing 23 files.
2008-10-19 06:08:30 UTC in Narrative -- Cocoa Plotting Framework
-
schristley committed revision 3 to the Swarm Version 3 SVN repository, changing 2 files.
2006-09-12 21:31:46 UTC in Swarm Version 3
-
schristley committed revision 2 to the Swarm Version 3 SVN repository, changing 11 files.
2006-08-18 21:11:30 UTC in Swarm Version 3
-
schristley committed revision 1 to the Swarm Version 3 SVN repository, changing 22 files.
2006-08-18 21:07:38 UTC in Swarm Version 3
