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There are missing links to ChEMBL entries:
http://www.ebi.ac.uk/chembldb/index.php/compound/inspect/1370
There should be a ChEMBL entry here as you can see by the Secondary Id's:
http://www.ebi.ac.uk/chebi/searchId.do?chebiId=8499.
2009-11-10 20:51:14 UTC in ChEBI
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Hi,
Classification high up in the ontology should not be allowed. This entry has been classified as a role which we should basically disallow:
http://www.ebi.ac.uk/chebi/searchId.do?viewTermLineage=true&chebiId=CHEBI:53431#termLineage
Only anything below chemical, biological and application should be allowed.
Cheers,
P.
2009-11-06 14:52:04 UTC in ChEBI
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Doing a similarity search with paracetamol and excluding the id 46195 using BUT NOT only finds paracetamol which is not what I was searching for.
2009-11-06 13:32:28 UTC in ChEBI
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Searching for C6H6O4 and then selecting in the 'Filter ontology Term' the operator BUT NOT 'carboxylic acid' gives an error.
Exception message: null
Exception type: java.lang.NullPointerException
Exception stacktrace: java.lang.NullPointerException at uk.ac.ebi.chebi.utilities.textSearch.lucene.ChemicalAnalyzer.tokenStream(ChemicalAnalyzer.java:20) at...
2009-11-06 13:05:25 UTC in ChEBI
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In the About ChEBI page at the bottom regarding Acknowledgements.
Add the following images next to ChemAxon, images should all be the same size next to each other:
http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Cdklogo.svg/200px-Cdklogo.svg.png
http://orchem.sourceforge.net/logo.jpg
Ask Mark for a JChemPaint logo.
2009-11-02 10:31:48 UTC in ChEBI
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In the about ChEBI page.
You need to add the following funding below the EU funding of SLING:
ChEBI is funded by BBSRC, grant agreement number BB/G022747/1 within the “Bioinformatics and biological resources” fund.
Also below the EU flag, display the BBSRC image.
http://www.bbsrc.ac.uk/images/logos/bbsrc/nostrap_bbsrc_colour_thumb.gif
Remember you need to keep this inline with...
2009-11-02 10:24:06 UTC in ChEBI
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Currently not working on wwwdev.
2009-11-02 09:46:37 UTC in ChEBI
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The following link currently works:
http://www.ebi.ac.uk/chebi/searchFreeText.do?searchString=FAD
However in the new website it doesn't work:
http://wwwdev.ebi.ac.uk/chebi/searchFreeText.do?searchString=FAD
It should get forwarded to the advancedSearch and work.
2009-10-30 09:48:07 UTC in ChEBI
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The publication section should look like this:
How to cite ChEBI
de Matos, P., Alcántara, R., Dekker, A., Ennis, M., Hastings, J., Haug, K., Spiteri, I., Turner, S., and Steinbeck, C. (2009). Chemical entities of biological interest: an update. Nucleic acids research, pages gkp886+.
Other publications:
Degtyarenko, K., Hastings, J., de Matos, P., and Ennis, M. (2009). Chebi: an open...
2009-10-29 11:39:33 UTC in ChEBI
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The About ChEBI page should start with an introduction.
This text should be removed:
ChEBI Search
Wildcard character is *
Example: "iron*", "InChI=1/H2O/h1H2"
I think we should move the following sentence to the front page, below the Advanced Search and About ChEBI links:
Wildcard character is *.
2009-10-29 11:33:58 UTC in ChEBI
