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STARS was originally written in 2001 for the bioinformatics servers at the University of Oxford running the Solaris operating system. The original developers are now in other employment and are no longer supporting or developing STARS as part of their work. The recommended route for obtaining STARS is now the biolinux project run by the NERC Environmental Bioinformatics Centre in Oxford...
2008-12-17 17:44:05 UTC in STARS - sequence typing
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source committed to cvs.
2004-11-22 10:44:48 UTC in STARS - sequence typing
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mansuen committed patchset 3 of module stars to the STARS - sequence typing CVS repository, changing 1 files.
2004-11-19 17:42:19 UTC in STARS - sequence typing
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mansuen committed patchset 2 of module stars to the STARS - sequence typing CVS repository, changing 33 files.
2004-11-19 16:48:05 UTC in STARS - sequence typing
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mansuen committed patchset 1 of module stars to the STARS - sequence typing CVS repository, changing 33 files.
2004-11-19 16:48:05 UTC in STARS - sequence typing
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I was trying to upload files to the cvs for the project
stars. I noticed that there were already files (seen using
the web browser) there from an old project also called
stars (we took over the name from them). what should I
do.
Can you also check that I am the admin of that project
on the cvs server since I didn't manage to log in or
import any files.
Thanks
Man-Suen Chan.
2004-11-08 15:53:00 UTC in SourceForge.net
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STARS has been released on sourceforge. For installation instructions please see http://www.molbiol.ox.ac.uk/~paediat/stars/index.html which is the main home page of the project.
2004-02-25 14:51:51 UTC in STARS - sequence typing
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I have fixed a bug seen by derrick crook's group. contig editor hangs on contigs with long single stranded region on reverse strand. I have changed the code so that now contigs are opened on the first base of the forward strand. files affected, contig-editor and mlst.tcl. molbiol is fixed, new download incorporates fix as of 23/12/03.
We'll sort out better way to report bugs soon!
2003-12-23 17:17:37 UTC in STARS - sequence typing
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Thanks for your reply.
I didn't mention it but I agree that quality values should be in the database.
Also I agree repeats can be a problem, at the moment the naming scheme is strain.locus1/2.abi, is it necessary to change this? or do we let the user edit the strain.
about the new staden folder for each plate - do these folders stay there forever or do they get deleted when the plate is...
2003-11-25 12:01:59 UTC in STARS - sequence typing
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This first topic for discussion is database design. As a result of previous discussions, it has suggested that an underlying database should be incorporated into stars before any other major development should take place.
It is suggested that:
1. The primary function of the stars database is for sequencing project management. Groups may have their own databases for MLST etc.
2. the stars...
2003-11-21 12:07:09 UTC in STARS - sequence typing
