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Sadly this is impossible, since the eclipse-cs plugin does not add anything to the package explorer symbol. Eclipse displays the warning annotation for elements having any warning, wheter it be a Java compiler warning, a Checkstyle message or any other warning. This is Eclipse standard behaviour and cannot be changed by the eclipse-cs plugin.
To differentiate between compiler and Checkstyle...
2009-11-10 18:58:33 UTC in Eclipse Checkstyle Plug-in
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lkoe made 1 file-release changes.
2009-11-04 22:57:03 UTC in Eclipse Checkstyle Plug-in
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Indeed, severity handling has been a bit weird traditionally.
One thing that needs to be considered is that Checkstyle has a severity inheritance mechanism. That is, the a child module inherits the parent module severity - unless it defines an own severity.
For 5.0.3 I changed the severity handling in the configuration editor a bit to be more explicit (and therefore hopefully more logical)...
2009-11-04 22:34:07 UTC in Eclipse Checkstyle Plug-in
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lkoe committed patchset 10 of module net.sf.eclipsecs.build to the Eclipse Checkstyle Plug-in CVS repository, changing 1 files.
2009-11-04 22:24:59 UTC in Eclipse Checkstyle Plug-in
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lkoe committed patchset 21 of module net.sf.eclipsecs.doc to the Eclipse Checkstyle Plug-in CVS repository, changing 3 files.
2009-11-04 22:24:59 UTC in Eclipse Checkstyle Plug-in
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Fixed in CVS, will be part of 5.0.3.
2009-11-04 22:20:58 UTC in Eclipse Checkstyle Plug-in
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lkoe committed patchset 55 of module net.sf.eclipsecs.core to the Eclipse Checkstyle Plug-in CVS repository, changing 1 files.
2009-11-04 22:18:01 UTC in Eclipse Checkstyle Plug-in
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lkoe committed patchset 54 of module net.sf.eclipsecs.core to the Eclipse Checkstyle Plug-in CVS repository, changing 7 files.
2009-11-04 22:11:36 UTC in Eclipse Checkstyle Plug-in
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lkoe committed patchset 31 of module net.sf.eclipsecs.checkstyle to the Eclipse Checkstyle Plug-in CVS repository, changing 1 files.
2009-11-04 22:11:34 UTC in Eclipse Checkstyle Plug-in
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lkoe committed patchset 53 of module net.sf.eclipsecs.core to the Eclipse Checkstyle Plug-in CVS repository, changing 1 files.
2009-11-04 22:10:57 UTC in Eclipse Checkstyle Plug-in