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The terms are difficult to solve. Group the terms by similar type and create the new tracker item for discussion.
2009-12-22 16:30:39 UTC in OBI
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There are 3 obsolete OBI terms (originally requested by MO group):
OBI_0100012 obsolete_ecotype
OBI_0100041 obsolete_cultivar
OBI_0100021 obsolete_strain
The terms deprecated without indicating reason in obi.owl. These terms still needed by MO.
2009-12-22 16:12:39 UTC in OBI
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AR: In my opinion you (JZ) should use UO:0000005 temperature unit.
There is progress on the discussion of changing UO. See
http://tinyurl.com/yec8c7s
JZ: The discussion only addressed changing some classes to instances in UO (eg: gram). Another issue about UO is its hierarchy structure. We would like to
import degree Celsius under UO:000005 temperature unit. However, it's
parent class...
2009-12-21 15:51:42 UTC in OBI
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CS and JZ:
After discussion, we would like to add some OBI unit label terms and MIREOT UO terms as their instances.
I revisited the UO terms I submitted to the tracker. "m", "mg" and "L" are not really used as MO term meanings in the MAGE-TAB files. I made a wrong mapping between MO IU and UO enzyme unit. count is not unit label. So it ended with 5 unit labels we need to add to OBI and...
2009-12-21 15:46:08 UTC in OBI
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jzheng24 committed revision 2679 to the OBI SVN repository, changing 2 files.
2009-12-18 22:30:52 UTC in OBI
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I think I have similar idea as Chris. Add some unit label terms (not many) to either OBI or IAO.
Here they are:
mass unit label
concentration unit label
temperature unit label
length unit label
time unit label
volume unit label
If we decide to add these unit label terms to OBI, I'd like to do it.
2009-12-16 23:24:28 UTC in OBI
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EFO IDs were added in new uploaded file. Since some terms were in EFO, the IDs refer to the term instead of suggested superclass.
Add comments under "Comments Jie" column
Have trouble with "Fasted". Leave comment and need help on it.
2009-12-16 17:33:42 UTC in EFO
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cell_lysate - OBI_1000036 cell lysate
genomic_DNA - add to OBI on Dec 17, Dev call
named as "high molecular weight DNA extract".
2009-12-16 17:15:47 UTC in OBI
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Have added definitions. Please check attached ExperimentalFactorValue-v4.xls
There are some diet related terms, I added "Diet" with definition (NCI Thesaurus) as well.
2009-12-16 00:09:07 UTC in EFO
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Driving use cases of the MGED ontology (MO) is MAGE-TAB files.
MAGE-TAB format files are simple tab-delimited spreadsheet files (SDRF file is one type of MAGE-TAB files) used to describe a microarray experiment. They typically contain some annotations using the MO.
Material type related terms are used in MAGE-TAB files to describe the state of biomaterial during the process of a microarray...
2009-12-15 23:02:08 UTC in OBI
