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Can't change memory allocation from default 1042 in preferences.
I'm sure this bug has already been slain, but seems to have come back from the dead in 2.1beta. Perhaps something to do with moving the preferences around?.
2009-11-11 21:29:40 UTC in Gene Ontology
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I use a combination of emacs and OE2 for editing, as I'm pretty sure some other users do. Would it be possible to add a feature that checks the file on disc regularly to see if its changed and if it has, trigger a prompt asking for auto-reload if there are no edits to be saved, or if there are, asking whether the users wants to reload, save current edits in OE2 or ignore.
(BTW - The fact...
2009-11-03 17:22:26 UTC in Gene Ontology
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It would be very useful to have a way of searching for intersection (XP) terms that also have one or more regular asserted relationships. AFAIK, this is not currently possibly
This pattern of definition is useful, but also potentially dangerous because it hides assertions. If this pattern is used, It is important to keep track of its usage. For example, one could set a render to highlight...
2009-11-03 13:28:50 UTC in Gene Ontology
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It seems to me that there are potentially a whole set of useful terms missing from GO to deal with control movement distribution and availability of extracellular ligands.
For example, experiments in this paper 'FBrf0183876 == Glise et al., 2005, Dev. Cell 8(2): 255--266', show that the gene 'shf' is required for the normal movoement and accumulation of hh in the developing imaginal discs.
2009-10-27 16:26:24 UTC in Gene Ontology
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djs93 committed patchset 4620 of module obo to the Open Biomedical Ontologies CVS repository, changing 1 files.
2009-10-22 17:07:05 UTC in Open Biomedical Ontologies
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Running obomerge from the command line:
./obomerge -fail-on-clash ALWAYS -original original.obo -revision branch1.obo -revision branch2.obo -o merged.obo
Where branch1.obo and branch2.obo have modifications to the same definition text, only the text from the branch1.obo revision is kept (The def_dbxrefs are merged fine.)
It seems to me that the correct behavior here would be to refuse...
2009-10-16 15:07:09 UTC in Gene Ontology
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djs93 committed patchset 4576 of module obo to the Open Biomedical Ontologies CVS repository, changing 1 files.
2009-10-15 15:26:58 UTC in Open Biomedical Ontologies
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djs93 committed patchset 4575 of module obo to the Open Biomedical Ontologies CVS repository, changing 1 files.
2009-10-15 12:32:32 UTC in Open Biomedical Ontologies
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djs93 committed patchset 4569 of module obo to the Open Biomedical Ontologies CVS repository, changing 1 files.
2009-10-14 16:18:56 UTC in Open Biomedical Ontologies
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djs93 committed patchset 4568 of module obo to the Open Biomedical Ontologies CVS repository, changing 1 files.
2009-10-14 13:45:25 UTC in Open Biomedical Ontologies
