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Contents

TODO:

Links:


Get MAC Address:

DICOM Server

HL7

[HL7 XML Editor]

XML stuff / IODS / Modules

Try to produce a dcmiod.xml compatible file

DICOM images

  • Andreas Knopke send me a couples of images hard to deal with.

DICOM files 

$ cat /tmp/source.media | sort  | uniq
(0002,0002) UI =CTImageStorage                          #  26, 1 MediaStorageSOPClassUID
(0002,0002) UI =ComputedRadiographyImageStorage         #  26, 1 MediaStorageSOPClassUID
(0002,0002) UI =DRAFT_SRDetailStorage                   #  28, 1 MediaStorageSOPClassUID
(0002,0002) UI =GrayscaleSoftcopyPresentationStateStorage #  28, 1 MediaStorageSOPClassUID
(0002,0002) UI =MRImageStorage                          #  26, 1 MediaStorageSOPClassUID
(0002,0002) UI =MediaStorageDirectoryStorage            #  20, 1 MediaStorageSOPClassUID
(0002,0002) UI =NuclearMedicineImageStorage             #  26, 1 MediaStorageSOPClassUID
(0002,0002) UI =SecondaryCaptureImageStorage            #  26, 1 MediaStorageSOPClassUID
(0002,0002) UI =UltrasoundImageStorage                  #  28, 1 MediaStorageSOPClassUID
(0002,0002) UI =UltrasoundMultiframeImageStorage        #  28, 1 MediaStorageSOPClassUID
(0002,0002) UI =XRayAngiographicImageStorage            #  28, 1 MediaStorageSOPClassUID
(0002,0002) UI =XRayFluoroscopyImageStorage             #  28, 1 MediaStorageSOPClassUID
(0002,0002) UI [1.2.840.113619.4.26]                    #  20, 1 MediaStorageSOPClassUID

DICOM Standard

I should be able to generate a PS 3.6 from PS 3.3 and thus by comparing to PS 3.6 find out if all RET elements are indeed RET.

Side note: Pixel Spacing Calibration Description (0029,0404) was resolved:

conformance statement

  • "Private Creator" DICOM 2001 2005 site:www.medical.philips.com filetype:pdf

Issue

Explicit-VR transfer syntax limits the value multiplicity of DICOM data elements with decimal string (DS) value representation

Validation

[Design and Implementation of a validating XML parser in Haskell: Master's thesis; University of Applied Sciences Wedel ]

PVRG nightmare

MediaWiki

Installation

Installation on sourceforge was done, thanks to:

Other refs (not tested yet):

Official ref:

TODO:

Backup

Configuration

Edit file /home/groups/g/gd/gdcm/htdocs/wiki/LocalSettings.php

Help

Bug

Subversion

TODO:

config 

$ cat ~/.subversion/config

interactive-conflicts = no
enable-auto-props = yes

[auto-props]
*.i = svn:mime-type=text/plain;svn:eol-style=native
*.in = svn:mime-type=text/plain;svn:eol-style=native
*.tpl = svn:mime-type=text/plain;svn:eol-style=native
*.dic = svn:mime-type=text/plain;svn:eol-style=native
*.xml = svn:mime-type=text/xml;svn:eol-style=native
*.dcm = svn:mime-type=application/dicom
*.ima = svn:mime-type=application/dicom
*.acr = svn:mime-type=application/dicom
*.pdf = svn:mime-type=application/octet-stream
*.xsd = svn:mime-type=text/xml;svn:eol-style=native
*.xsl = svn:mime-type=text/xml;svn:eol-style=native
*.html = svn:mime-type=text/html;svn:eol-style=native
*.txt = svn:mime-type=text/plain;svn:eol-style=native
*.cmake = svn:mime-type=text/plain;svn:eol-style=native
*.jpeg = svn:mime-type=image/jpeg
*.png = svn:mime-type=image/png
*.doc = svn:mime-type=application/msword
*.dsp = svn:mime-type=text/plain;svn:eol-style=CRLF
*.dsw = svn:mime-type=text/plain;svn:eol-style=CRLF
*.c = svn:mime-type=text/plain;svn:eol-style=native
*.cpp = svn:mime-type=text/plain;svn:eol-style=native
*.hpp = svn:mime-type=text/plain;svn:eol-style=native
*.cxx = svn:mime-type=text/plain;svn:eol-style=native
*.txx = svn:mime-type=text/plain;svn:eol-style=native
*.h = svn:mime-type=text/plain;svn:eol-style=native
*.sh = svn:mime-type=text/plain;svn:eol-style=native
*.py = svn:mime-type=text/plain;svn:eol-style=native
*.cs = svn:mime-type=text/plain;svn:eol-style=native
*.man = svn:mime-type=text/plain;svn:eol-style=native
*.config = svn:mime-type=text/plain;svn:eol-style=native
.NoDartCoverage = svn:mime-type=text/plain;svn:eol-style=native
*.jpg = svn:mime-type=image/jpeg
*.bmp = svn:mime-type=image/bmp
Makefile = svn:mime-type=text/plain;svn:eol-style=native
TODO = svn:mime-type=text/plain;svn:eol-style=native
README = svn:mime-type=text/plain;svn:eol-style=native
# debian files:
*.install = svn:mime-type=text/plain;svn:eol-style=native
*.patch = svn:mime-type=text/plain;svn:eol-style=native
*.docs = svn:mime-type=text/plain;svn:eol-style=native
*.Debian = svn:mime-type=text/plain;svn:eol-style=native
rules = svn:mime-type=text/plain;svn:eol-style=native
changelog = svn:mime-type=text/plain;svn:eol-style=native
compat = svn:mime-type=text/plain;svn:eol-style=native
control = svn:mime-type=text/plain;svn:eol-style=native
watch = svn:mime-type=text/plain;svn:eol-style=native
COPYING = svn:mime-type=text/plain;svn:eol-style=native
get-orig-source = svn:mime-type=text/plain;svn:eol-style=native
copyright = svn:mime-type=text/plain;svn:eol-style=native
series = svn:mime-type=text/plain;svn:eol-style=native

diffing to a date 

$ svn di -r {2008-01-01} > /tmp/diff.patch

merging / branch

Doing a merge with svn 1.4.2 is slightly more painful: 

$ cd branches/gdcm-2-0
$ svn log --verbose --stop-on-copy https://gdcm.svn.sourceforge.net/svnroot/gdcm/branches/gdcm-2-0
$ svn merge --accept=postpone -r 2604:2609 https://gdcm.svn.sourceforge.net/svnroot/gdcm/trunk
$ svn ci -m"ENH: merging back 2604:2609 changes"

Create a new gdcm tag 

$ svn copy https://gdcm.svn.sourceforge.net/svnroot/gdcm/branches/gdcm-2-0 https://gdcm.svn.sourceforge.net/svnroot/gdcm/tags/gdcm-2-0-8 -m"ENH: Tagging the gdcm 2.0.8 release"

Ref:

Design Pattern


Serialization and Unserialization

after a post:


iocharset 

//path/to/remote/      /mnt/smb  cifs    noauto,user,users,username=mmalaterre,uid=1002,gui=1002,iocharset=iso8859-1,codepage=850     0       0

smbfs would not work, neither would cifs+utf8 :(

debian

debian-med

TODO

debian-med tech

this is needed in new svn dir (when propset is not set) 

$ export DEB_BUILD_OPTIONS=parallel=4 
$ svn propset mergeWithUpstream 1 debian

$ echo "origDir=.." >> .svn/deb-layout && uscan --force-download

Otherwise you need to use get-orig-source:

$ ./debian/rules get-orig-source

Make sure it output in ../tarballs 

$ svn-buildpackage --svn-override=origDir=.. --svn-ignore-new -rfakeroot -us -uc


upload

References:

  1.  http://www.debian.org/doc/packaging-manuals/developers-reference/
  2. http://www.debian.org/doc/manuals/maint-guide/
  3.  http://www.debian.org/doc/packaging-manuals/python-policy/
    1. http://wiki.debian.org/DebianPython/NewPolicy
  4. http://pkg-mono.alioth.debian.org/cli-policy/
    1.  http://pkg-mono.alioth.debian.org/cli-policy/ch-packaging.html#s-gac-naming-versioning
  5. http://java.debian.net/
    1. http://www.debian.org/doc/packaging-manuals/java-policy/
  6. http://webapps-common.alioth.debian.org/draft-php/html/ch-php-libs.html
    1. http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=521333
    2. http://wiki.debian.org/PHP
    3. http://qa.debian.org/developer.php?login=pkg-php-maint@lists.alioth.debian.org
  7. http://pbuilder.alioth.debian.org/ 
$ cd debian-med/trunk/packages/gdcm/trunk
$ svn-buildpackage --svn-tag-only --svn-noautodch
$ svn-buildpackage --svn-override=origDir=.. --svn-ignore-new -rfakeroot -k0EA23F2B   
$ cd ../build-area
$ dupload gdcm_2.0.10-2_amd64.changes

I could not get svn-buildpackage to recognize the env var: 

$ cat ~/.devscripts
DEBSIGN_KEYID=0EA23F2B

maybe because of [1]

Another way is to: 

tar -xzf *.orig.tar.gz
cd <source-directory>
cp -a <svn-pkg-dir>/trunk/debian .
rm -rf `find . -type d -name .svn`
pdebuild --auto-debsign --debsign-k 0EA23F2B

CMake

TODO, reproduce the packaging of VTK for GDCM:

CMake / Install framework

c++ / socket-stream

C++ DbC / Design by Contract


C++ and templates

[Automatic, Template-Based Run-Time Specialization: Implementation and Experimental Study]

Groups:

A fun thread:

Fixes for Library Bugs in VC++ V5.0/V6.0

virtual template member function

vim


gpg

C++

Portable and exact bi-directional float to shortest string conversion

Forward declaration of ostream and string:

Error and Exception Handling

Exception Handling

Unchaining Chained Exceptions in C++

Portability Hints: Microsoft Visual C++ 6.0 SP4

Portability Hints: Borland C++ 5.5.1

Mudflap Pointer Debugging

Correct C++ tutorial

C++ FAQ:

A Regular Expression Tokenizer using the YARD Parser

virtual function template - design problem (aka vistor pattern):

parallel libstdc++

C++ I/O Stack Library

How do compilers use "over-allocation" to remember the number of elements in an allocated array?

POD Types

Destructors FAQ

User:Mathieu/Dev

C

GetModuleFileName

A more complex implementation can be found in VTK/CMake/ITK:

It also implement the solution of parsing argv[0] to extract the full path

XML

DTD vs XSD

Binary XML

XML 2 C++

XSD

python

python/qt

graph

Email

starttls + openssl:

Shell

bash

tr

How to filter out the \0 character: 

$ cat input.xml | tr -d "\000" > bla.xml

find 

$ find /usr -type d -exec find {} -maxdepth 1 -type f -print -quit \;

$ find -type f | grep -v .svn | xargs sed -i -e 's/  Copyright (c) 2006 Mathieu Malaterre/  Copyright (c) 2006-2007 Mathieu Malaterre/g'

Remove any line containing the word 'FOOBAR' 

$ find -type f -name \*.xml -exec sed -i -e '/FOOBAR/d'

screen

XML/XSL

Comparing two XML file:

XML / C++

Sourceforge

things I always forgot 

$ rsync -avh master.dl.sourceforge.net::sourceforge/g/gd/gdcm/

Direct link (before mirror syncing):

To create a virtual package, you need to upload/delete/re-upload the file and associate it. Directories are not allowed, instead use a tarball.

My upload:


releaseforge

Maybe the most important package of all :


system info 

General Configuration: The project web server is running an updated version of the Fedora Core 2 distribution of Linux.

% /lib/libc.so.6 
GNU C Library stable release version 2.3.4, by Roland McGrath et al.
Copyright (C) 2005 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
Compiled by GNU CC version 3.4.6 20060404 (Red Hat 3.4.6-3).
Compiled on a Linux 2.4.20 system on 2006-08-12.
Available extensions:
        GNU libio by Per Bothner
        crypt add-on version 2.1 by Michael Glad and others
        linuxthreads-0.10 by Xavier Leroy
        The C stubs add-on version 2.1.2.
        BIND-8.2.3-T5B
        NIS(YP)/NIS+ NSS modules 0.19 by Thorsten Kukuk
        Glibc-2.0 compatibility add-on by Cristian Gafton 
        GNU Libidn by Simon Josefsson
        libthread_db work sponsored by Alpha Processor Inc
Thread-local storage support included.
For bug reporting instructions, please see:
<http://www.gnu.org/software/libc/bugs.html>.

% uname -a
Linux pr-shellC.sourceforge.net 2.6.9-42.0.10.ELsmp #1 SMP Tue Feb 27 10:11:19 EST 2007 i686 athlon i386 GNU/Linux

% cat /proc/cpuinfo 
processor       : 0
vendor_id       : AuthenticAMD
cpu family      : 15
model           : 33
model name      : Dual Core AMD Opteron(tm) Processor 275
stepping        : 2
cpu MHz         : 0.000
cache size      : 1024 KB
fdiv_bug        : no
hlt_bug         : no
f00f_bug        : no
coma_bug        : no
fpu             : yes
fpu_exception   : yes
cpuid level     : 1
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx mmxext lm 3dnowext 3dnow pni
bogomips        : 1404.92

processor       : 1
vendor_id       : AuthenticAMD
cpu family      : 15
model           : 33
model name      : Dual Core AMD Opteron(tm) Processor 275
stepping        : 2
cpu MHz         : 0.000
cache size      : 1024 KB
fdiv_bug        : no
hlt_bug         : no
f00f_bug        : no
coma_bug        : no
fpu             : yes
fpu_exception   : yes
cpuid level     : 1
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx mmxext lm 3dnowext 3dnow pni
bogomips        : 2162.68


mysql

rsync 

rsync osdn.dl.sourceforge.net::sourceforge/g/gd/gdcm/
rsync -vt osdn.dl.sourceforge.net::sourceforge/g/gd/gdcm/gdcm-1.2.1.tgz .
wget ftp://ftp1.sf.net/pub/sourceforge/g/gd/gdcm/gdcm-1.2.1.tgz
wget --passive-ftp ftp://ftp1.sf.net/pub/sourceforge/g/gd/gdcm/gdcm-1.2.1.tgz

CVS

Recent problem when switching CVS: 

cd wxVTK
find -name Root |
   grep '/CVS/Root$' |
   xargs sed -i -e 's/@cvs/@wxvtk.cvs/'

Bug of SVN on SF.net

I kept on getting: 

$ svn ci -m"ENH: update" gdcm2pdf.xsl
Adding         gdcm2pdf.xsl
svn: Commit failed (details follow):
svn: COPY of gdcm2pdf.xsl: 403 Forbidden (https://svn.sourceforge.net)

So I followed:

and ran the following command: 

$ svn switch --relocate  https://svn.sourceforge.net/svnroot/gdcm  https://gdcm.svn.sourceforge.net/svnroot/gdcm

Bug #2 of SVN on SF.net

Reported:

subversion / hooks

upload newest doxygen 

$ scp Utilities/doxygen/gdcm-2.1.0-doc.tgz shell.sf.net:/home/groups/g/gd/gdcm/htdocs                                                               

$ ssh shell.sf.net "cd /home/groups/g/gd/gdcm/htdocs && tar xvfz gdcm-2.1.0-doc.tgz"

Using C for Linux kernel

http://www.tux.org/lkml/#ss15

google

[A Simple 4 Step Approach To Have Google Crawl Your Site Today Guaranteed!]

dicompedia

nrg file

Mounting a CDROM.nrg file: 

nrg2iso CDROM.nrg CDROM.iso
mkdir /tmp/iso
sudo mount CDROM.iso /tmp/iso -t iso9660 -o loop

Wrapping

Note: need to check out Boost.Python

See also User:Mathieu/Notes See also User:Mathieu/TODO

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