Add library type fr-firststrand to bowtie2
I will close this for now since it seems solved. Val
bug in detection of redundant alignments with soft-clipping
This was pulled into bowtie2. thanks for the patch, Val
Code is already here https://github.com/BenLangmead/bowtie/archive/master.zip. We...
Not sure what to say about this. Bowtie2 local search works on the examples I have....
Trimming more than read length causes a crash (bowtie 1.1.1, paired-end)
Fixed for the next release