Activity for Dave

  • Dave Dave committed [8413da]

    fix for species with spaces in their names (e.g...

  • Dave Dave committed [c3f99a]

    more detailed error when seq matches multiple t...

  • Dave Dave committed [a5f509]

    include mention of intronic coordinates and add...

  • Dave Dave committed [11483c]

    make sure alleles are in same case for getVepCo...

  • Dave Dave committed [8b6829]

    slim down methods

  • Dave Dave committed [49d639]

    get span of MNVs

  • Dave Dave committed [465302]

    move mapperTask implementation to codingToGenom...

  • Dave Dave committed [47500e]

    move getCdsPosition and getUtrPosition methods ...

  • Dave Dave committed [09135b]

    bind options menus and display transcript resul...

  • Dave Dave committed [1e1073]

    adjust menu

  • Dave Dave committed [737819]

    add mac icon

  • Dave Dave committed [b44df5]

    fix bugs with cdsToVarAlleles method

  • Dave Dave committed [d6d8ac]

    get more details from VEP

  • Dave Dave committed [3fe05c]

    add menu items

  • Dave Dave committed [089c3c]

    make main window request focus after errors

  • Dave Dave committed [c6b814]

    add exon/intron column and options menu

  • Dave Dave committed [c8f843]

    change default row height

  • Dave Dave committed [7284e8]

    make index a string

  • Dave Dave committed [57032b]

    add build scripts

  • Dave Dave committed [5813e7]

    move methods for clarity. Add partial method fo...

  • Dave Dave committed [f0e0dc]

    remove superfluous characters from refseq trans...

  • Dave Dave committed [eb60bb]

    get polyphen scores, sift scores, SNP info and ...

  • Dave Dave committed [39154b]

    change sizes and text wrapping

  • Dave Dave committed [798e44]

    more columns and width adjustments

  • Dave Dave committed [0761b8]

    change run button size (hopefully to fit cancel...

  • Dave Dave committed [19226c]

    add menu items, adjust indexing method

  • Dave Dave committed [99b9d9]

    make menu non-focus-traversable

  • Dave Dave committed [adfabb]

    add exon/intron numbering, refseq IDs and canon...

  • Dave Dave committed [48e329]

    remove unwieldy constructors, add some setters ...

  • Dave Dave committed [38a82c]

    fix imports, update TO DOs!

  • Dave Dave committed [cbf140]

    more columns

  • Dave Dave committed [7ab960]

    add getRefSeqIds method. Add canonical info as ...

  • Dave Dave committed [482d5c]

    check mutation text field when using CDS coordi...

  • Dave Dave committed [bf248d]

    correct an error where only the last enountered...

  • Dave Dave committed [05fff6]

    add old icon

  • Dave Dave committed [98d86b]

    add mac os x binaries

  • Dave Dave committed [337da0]

    add make binaries script

  • Dave Dave committed [68046f]

    add space after SYNOPSIS heading so that Pod::U...

  • Dave Dave committed [f2663d]

    use pp5.16 on mac os x and refactor pod2usage t...

  • Dave Dave committed [7b27ae]

    move doc to end of file

  • Dave Dave committed [d793f1]

    remove double pipes in place of or

  • Dave Dave committed [f0f292]

    Merge branch 'master' of https://github.com/gan...

  • Dave Dave committed [72e3d0]

    rebuild binaries so that pod works

  • Dave Dave committed [8aae42]

    update mac binaries to fix entrezgene.pm problems

  • Dave Dave committed [7b32a2]

    add binary and script specific readmes

  • Dave Dave committed [8d6281]

    fix issues with External::Sort

  • Dave Dave committed [dbd0b5]

    improve efficiency of new sort sub

  • Dave Dave committed [6ff9fb]

    improve efficiency even more (maybe?) if contig...

  • Dave Dave committed [e78b14]

    delete binaries and relocated modules

  • Dave Dave committed [e59051]

    formatting

  • Dave Dave committed [4489f0]

    move vep plugins to own folder

  • Dave Dave committed [32259d]

    move vep plugins to own folder

  • Dave Dave committed [7b755b]

    add relevant readme/examples files

  • Dave Dave committed [47a306]

    add utilities for making disitributable scripts...

  • Dave Dave committed [b13914]

    corrections to module loading when creating PAR

  • Dave Dave committed [2e2d71]

    remove outdated references to modules

  • Dave Dave committed [e694e6]

    correct filesize check

  • Dave Dave committed [e84586]

    add macosx par (perl 5.16.3)

  • Dave Dave committed [c20ad6]

  • Dave Dave committed [acf0a1]

  • Dave Dave committed [76a417]

  • Dave Dave committed [71a5e0]

    imcomplete implementation of change to XML file...

  • Dave Dave committed [64be9e]

    use platform specific fxmls

  • Dave Dave committed [cac2c2]

    give option to open saved files after saving

  • Dave Dave committed [c77432]

    layout changes

  • Dave Dave committed [74f38d]

    Merge branch 'master' into testing

  • Dave Dave committed [r326]

    * doc/book/book/ch06.xml : Small grammar fix.

  • Dave Dave committed [r533]

    * doc/book/book/ch00.xml : Speling correction.

  • Dave Dave committed [019a95]

    Added Curt to empty Authors file as CVS test.

  • Dave Dave committed [6fa9f8]

    Added trace attributes to properties:

  • Dave Dave committed [6f1bfa]

    -Added .cvsignore files to clean up CVS messages

  • Dave Dave committed [c6aa8b]

    Fixed Makefile.am to install easyxml.hxx in the...

  • Dave Dave committed [93fd94]

    Added aclocal.m4

  • Dave Dave committed [a62516]

    Added some new functionality to the property ma...

  • Dave Dave committed [2d1b2c]

    Minor fixes from Cameron Moore.

  • Dave Dave committed [dd629d]

    Replaced some cout's with SG_LOG (fixes namespa...

  • Dave Dave committed [aef809]

    IMPORTANT: backwards-incompatible change to pro...

  • Dave Dave committed [89fcb1]

    Cleanups from Petru Paler:

  • Dave Dave committed [cc3d7d]

    Minor changes to path caching.

  • Dave Dave committed [10715b]

    Modified to add an optional parameter to writeP...

  • Dave Dave committed [a2d95a]

    Patch from Martin Dressler to ensure that value...

  • Dave Dave committed [dbe4a5]

    Code cleanup and minor speed improvements. For...

  • Dave Dave committed [918f8a]

    Patches from Tony Peden to separate property XM...

  • Dave Dave committed [4d2522]

    Some code fixes to keep untying clean with new ...

  • Dave Dave committed [f9824a]

    Removed SGRawValueInternal class (it's now hand...

  • Dave Dave committed [9d96b1]

    Patch from Frederic Bouvier:

  • Dave Dave committed [9fed94]

    Include <algorithm> and <stdio.hxx> to fix comp...

  • Dave Dave committed [b13505]

    Fix segfault when deleting a node with a string...

  • Dave Dave committed [4d0bc0]

    Major property-manager rewrite, using const cha...

  • Dave Dave committed [8b5a0c]

    Patch from Tony Peden to remove unused variable...

  • Dave Dave committed [bed759]

    Moved includes higher to make sure that std::so...

  • Dave Dave committed [101fdb]

    Moved up #include <algorithm>

  • Dave Dave committed [c024b6]

    Removed commented-out dead code.

  • Dave Dave committed [bf75cf]

    Removed an unnecessary string allocation during...

  • Dave Dave committed [c89647]

    More rearrangement of headers. Replaced delete...

  • Dave Dave committed [be5d36]

    Patch from Melchior Franz:

  • Dave Dave committed [a8e000]

    Patch from Melchior Franz:

  • Dave Dave committed [d0d787]

    Patch from Melchior Franz:

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