Activity for J Alves

  • J Alves J Alves committed [63a988]

    Initial Git commit, version 1.6.5

  • J Alves J Alves committed [92a406]

    Comment/date fixes

  • J Alves J Alves committed [4a2024]

    Fix in version and update information.

  • J Alves J Alves committed [3e5aca]

    Complete rewrite of genome_downloader.pl to conform to NCBI's new data organization schemes. Added README.txt file and mapping_hasher (dependency).

  • J Alves J Alves committed [8718c7]

    Fixes in handling of absent quality values when using -use_qual

  • J Alves J Alves committed [78ba6e]

    Test commit, silly edit.

  • J Alves J Alves committed [e3fdfd]

    Merge branch 'master' of ssh://git.code.sf.net/...

  • J Alves J Alves committed [2752e2]

    Translated comment in bigou.pl

  • J Alves J Alves committed [e6ce06]

    New versions from Dec. 07 2016.

  • J Alves J Alves committed [d0cdb6]

    Changed line endings to UNIX

  • J Alves J Alves committed [ab29cf]

    Changed bowtie2 command to include -x, which is...

  • J Alves J Alves committed [a4f124]

    Added feature: choose which column of sequence ...

  • J Alves J Alves committed [f09106]

    Fixed bug that did not allow output sequences w...

  • J Alves J Alves committed [fcbe98]

    Fixed bug with -c mode, introduced by speed up.

  • J Alves J Alves committed [38b413]

    Update README

  • J Alves J Alves committed [c27944]

    Speed up: stop checking sequences file when all...

  • J Alves J Alves committed [5f6675]

    Fixed problem with matching strings that had th...

  • J Alves J Alves committed [7ddebd]

    Version 1.3.1. Quiet mode. Matching mode change...

  • J Alves J Alves committed [67575c]

    Implemented custom -align_threshold (equal to 0...

  • J Alves J Alves committed [b93e32]

    Fixed crash when there was no final contigs fil...

  • J Alves J Alves committed [171097]

    Fixed problem with final contig check. Provisory.

  • J Alves J Alves committed [bf2e78]

    Changed -aux_starter routines to use the intern...

  • J Alves J Alves committed [822c11]

    Fixed duplicated word in log file message.

  • J Alves J Alves committed [8ba778]

    Commented out commands for detailed stack trace.

  • J Alves J Alves committed [928125]

    Improved error handling and messages to the scr...

  • J Alves J Alves committed [706023]

    Inicial commit of Genome Downloader

  • J Alves J Alves committed [r9]

  • J Alves J Alves committed [r8]

    Fixed bug in option parsing code.

  • J Alves J Alves modified a blog post

    Version 0.7.2 released

  • J Alves J Alves modified a blog post

    Version 0.7.2 released

  • J Alves J Alves created a blog post

    Version 0.7.2 released

  • J Alves J Alves committed [r7]

    Now skipping comment lines, with the option of ...

  • J Alves J Alves modified a blog post

    Version 1.6.2a released

  • J Alves J Alves created a blog post

    Version 1.6.2a released

  • J Alves J Alves renamed a blog post

    Version 1.6.2 released

  • J Alves J Alves created a blog post

    Version 1.6.2 available

  • J Alves J Alves posted a comment on discussion Open Discussion

    I am also having the exact same problem, although I am starting from a FASTQ file....

  • J Alves J Alves created a blog post

    Data downloader now working with new KEGG

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