Open Babel

(From openbabel-devel)

Ok, it builds, but it segfaults in the CML tests. I've extracted one of
the
failing tests and ran it under gdb:

[rathann@ryvius
~/build/BUILD/openbabel-2.2.0b3-20080215-r2249/test/cmltest]$ gdb
../../tools/.libs/lt-babel
GNU gdb Red Hat Linux (6.6-16.fc7rh)
Copyright (C) 2006 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and you
are
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Type "show copying" to see the conditions.
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details.
This GDB was configured as "x86_64-redhat-linux-gnu"...
Using host libthread_db library "/lib64/libthread_db.so.1".
(gdb) run -isdf 3d.head.sdf -ocml 3d.head.2.cml
Starting program:
/home/rathann/build/BUILD/openbabel-2.2.0b3-20080215-r2249/tools/.libs/lt-b
abel -isdf 3d.head.sdf -ocml 3d.head.2.cml
warning: no loadable sections found in added symbol-file system-supplied
DSO at 0x7fffdbbfd000
70 molecules converted
785 audit log messages

Program received signal SIGSEGV, Segmentation fault.
0x00000030eba8f501 in std::ostream::sentry::sentry () from
/usr/lib64/libstdc++.so.6
Current language: auto; currently c
(gdb) bt full
#0 0x00000030eba8f501 in std::ostream::sentry::sentry () from
/usr/lib64/libstdc++.so.6
No symbol table info available.
#1 0x00000030eba8fd57 in std::ostream::write () from
/usr/lib64/libstdc++.so.6
No symbol table info available.
#2 0x00002aaab3fc225f in OpenBabel::XMLConversion::WriteStream
(context=<value optimized out>,
buffer=0x7fffdbace810 "���\227", len=-609425392) at xml.cpp:337
ofs = (ostream *) 0x7fffdbace810