Share

ArrayOligoSelector

Tracker: Bugs

5 arrayOligoSelector 3.8.4 problem - ID: 1323312
Last Update: Attachment added ( nobody )

Fails during Pick70_script1_contig on mitochondrial DNA sequence
of S. cerevisiae (divided into 2kb sequences). Error msg received:

File "code/Pick70_genome_itself.py", line 422, in ?
parsing_each_query(content,fout)
File "code/Pick70_genome_itself.py", line 246, in
parsing_each_query
query_len=parse_dic[query][0]
KeyError: 0
Program terminated

But when I removed the last ~2kb sequences from the sequence,
program was able to run.

I've attached the problematic sequence along with the mask file.

email: katy@genome.stanford.edu


Nobody/Anonymous ( nobody ) - 2005-10-10 21:54

5

Open

None

Nobody/Anonymous

None

None

Public


Comments




Log in to comment.

No follow-up comments have been posted.

Attached File ( 1 )

Filename Description Download
Scermt_84000.fsa sequence file Download

Change ( 1 )

Field Old Value Date By
File Added 152040: Scermt_84000.fsa 2005-10-10 21:55 nobody