|
2941997 |
iIJBHX <a href="http://tqbuzybodcaw.com/">tqbuzybodcaw</a>, |
Open
|
2010-01-29
|
allenday
|
nobody
|
None
|
5
|
|
2937480 |
citation truncation in GBrowse 1.70 |
Open
|
2010-01-22
|
scottcain
|
nathanweeks
|
None
|
5
|
|
2931662 |
OCF4io <a href="http://tttnhyhytoex.com/">tttnhyhytoex</a>, |
Open
|
2010-01-13
|
jmr39
|
nobody
|
None
|
5
|
|
2928335 |
Relative offset problem with Bio::DB::SeqFeature::Store |
Open
|
2010-01-08
|
scottcain
|
nathanweeks
|
None
|
5
|
|
2927837 |
Spectrogram plugin references images not in GBrowse 1.70 |
Closed
|
2010-01-07
|
sheldon_mckay
|
nathanweeks
|
None
|
3
|
|
2927805 |
BLAT plugin doesn't work with FASTA header |
Open
|
2010-01-07
|
scottcain
|
nathanweeks
|
None
|
5
|
|
2920291 |
dbid not passed to mouse over in karyotype view |
Open
|
2009-12-23
|
lstein
|
daveclements
|
None
|
5
|
|
2919514 |
xyplot glyph not rendering neg-color correctly |
Open
|
2009-12-22
|
scottcain
|
nobody
|
None
|
5
|
|
2907775 |
Remote tracks disappear on reload |
Open
|
2009-12-02
|
lstein
|
nobody
|
None
|
6
|
|
2898312 |
./Build test fails |
Open
|
2009-11-16
|
lstein
|
nobody
|
None
|
5
|
|
2878794 |
bad bookmarking/shared tracks interaction |
Open
|
2009-10-14
|
lstein
|
scottcain
|
None
|
5
|
|
2869478 |
Search by name fails if source is changed; works if reset |
Open
|
2009-09-29
|
lstein
|
neilfws
|
None
|
5
|
|
2850054 |
clickable glyphs break when track dragging turned off |
Closed
|
2009-09-03
|
lstein
|
nobody
|
None
|
5
|
|
2833768 |
Disabling draggable tracks disables balloons, hrefs |
Open
|
2009-08-07
|
scottcain
|
tharris
|
None
|
5
|
|
2833761 |
Bookmark this etc broken under load balancing env |
Open
|
2009-08-07
|
lstein
|
tharris
|
None
|
5
|
|
2823183 |
PDF Download not working due to SHELL env. var. not set |
Open
|
2009-07-17
|
scottcain
|
nathanweeks
|
None
|
5
|
|
2803716 |
Can't view details for first contig of any supercontig |
Open
|
2009-06-09
|
scottcain
|
kaben
|
None
|
5
|
|
2795484 |
Overview and region view tracks no longer clickable |
Open
|
2009-05-22
|
sheldon_mckay
|
scottcain
|
None
|
5
|
|
2787963 |
fix BulkWriter.pm |
Closed
|
2009-05-06
|
dongilbert
|
scottcain
|
Fixed
|
5
|
|
2787897 |
rebuild default schema |
Closed
|
2009-05-06
|
scottcain
|
scottcain
|
Out of Date
|
5
|
|
2787593 |
range query functions failing to load |
Open
|
2009-05-06
|
scottcain
|
scottcain
|
None
|
8
|
|
2765410 |
upload annotations broken in non-english |
Closed
|
2009-04-15
|
lstein
|
lstein
|
Fixed
|
7
|
|
2686022 |
Apollo userguide fails to open in windows version |
Open
|
2009-03-13
|
mgibson
|
nobody
|
None
|
5
|
|
2618933 |
Build test failed |
Open
|
2009-02-20
|
nobody
|
nobody
|
None
|
5
|
|
2585223 |
quoted pound signs in callbacks not handled |
Open
|
2009-02-10
|
lstein
|
scottcain
|
None
|
6
|
|
2564459 |
config option head being ignored |
Closed
|
2009-02-04
|
lstein
|
scottcain
|
Fixed
|
5
|
|
2564138 |
SeqFeature perl module with extra SQL line |
Closed
|
2009-02-04
|
lstein
|
easr
|
Fixed
|
5
|
|
2537898 |
dbi or DBI? |
Open
|
2009-01-26
|
lstein
|
easr
|
None
|
5
|
|
2520246 |
tmp_slave directory not created |
Closed
|
2009-01-19
|
lstein
|
nobody
|
Invalid
|
5
|
|
2510289 |
gbrowse_netinstall.pl doesn't compile if LWP::Simple missing |
Open
|
2009-01-15
|
scottcain
|
nathanweeks
|
None
|
5
|
|
2495416 |
GFFDumper.pm missing |
Closed
|
2009-01-09
|
scottcain
|
easr
|
Fixed
|
5
|
|
2494188 |
config option header is ignored |
Closed
|
2009-01-08
|
lstein
|
scottcain
|
Fixed
|
5
|
|
2491748 |
paths in sample config are not updated (GGB2.0) |
Closed
|
2009-01-07
|
lstein
|
easr
|
Fixed
|
5
|
|
2490417 |
paths in sample config are not updated (GGB2.0) |
Closed
|
2009-01-06
|
scottcain
|
easr
|
Duplicate
|
5
|
|
2490378 |
sample data is not copied/installed in GGB2.0 |
Open
|
2009-01-06
|
lstein
|
easr
|
Works For Me
|
5
|
|
2490320 |
META.yml is missing |
Closed
|
2009-01-06
|
scottcain
|
easr
|
Duplicate
|
5
|
|
2490304 |
META.yml is missing |
Closed
|
2009-01-06
|
lstein
|
easr
|
Invalid
|
5
|
|
2458142 |
CGI::Toogle.pm missing |
Closed
|
2008-12-22
|
lstein
|
easr
|
Fixed
|
5
|
|
2448979 |
Update $Id: $ from repository |
Closed
|
2008-12-19
|
scottcain
|
easr
|
Duplicate
|
5
|
|
2448830 |
Update $Id: $ from repository |
Closed
|
2008-12-19
|
scottcain
|
easr
|
Duplicate
|
5
|
|
2448023 |
Update $Id: $ from repository |
Closed
|
2008-12-19
|
lstein
|
easr
|
Fixed
|
1
|
|
2440294 |
Bio::Root::Exception using "./Build demo" |
Closed
|
2008-12-17
|
lstein
|
easr
|
Fixed
|
5
|
|
2440214 |
./Build demo fails: User directive setting is missing |
Closed
|
2008-12-17
|
scottcain
|
easr
|
Fixed
|
5
|
|
2439904 |
$apache instead of apache2 |
Closed
|
2008-12-17
|
lstein
|
easr
|
Fixed
|
5
|
|
2432707 |
GBrowse2.0 running ./Build test failed |
Closed
|
2008-12-16
|
lstein
|
nobody
|
Fixed
|
3
|
|
2235457 |
possible bug in bp_genbank2gff3.pl v 1.11 |
Closed
|
2008-11-07
|
scottcain
|
nobody
|
Out of Date
|
5
|
|
2230448 |
possible bug in bp_genbank2gff3.pl v 1.11 |
Closed
|
2008-11-06
|
scottcain
|
nobody
|
Duplicate
|
5
|
|
2184732 |
compatibility issues with recent Flybase |
Closed
|
2008-10-21
|
scottcain
|
madflava
|
Fixed
|
5
|
|
2168597 |
GBrowse on BioSQL and sequence versions |
Open
|
2008-10-15
|
lstein
|
maubp
|
None
|
5
|
|
2166364 |
Displaying protein residues using the segments glyph |
Closed
|
2008-10-14
|
lstein
|
stierli
|
Accepted
|
5
|
|
2138884 |
Gbrowse installation under windows |
Closed
|
2008-09-30
|
scottcain
|
nobody
|
Fixed
|
5
|
|
2130224 |
Bundle::GMOD out of date |
Closed
|
2008-09-26
|
scottcain
|
scottcain
|
Fixed
|
5
|
|
2129264 |
need to fix schema build order |
Closed
|
2008-09-25
|
scottcain
|
scottcain
|
Fixed
|
5
|
|
2073803 |
PrimerDesigner selection doesn't work |
Closed
|
2008-08-25
|
sheldon_mckay
|
nathanweeks
|
Fixed
|
5
|
|
2060539 |
AlignTwoSequences.pm plugin doesn't display any results |
Closed
|
2008-08-19
|
scottcain
|
nathanweeks
|
Fixed
|
5
|
|
2055150 |
Ideogram glyph attribute-fetching (or FeatureBase.pm) bug |
Closed
|
2008-08-16
|
mummi
|
mummi
|
Works For Me
|
5
|
|
2039165 |
Fail gracefully when there is a dash in the track name |
Closed
|
2008-08-05
|
lstein
|
scottcain
|
Fixed
|
5
|
|
2024691 |
link_target option doesn't work in TRACK DEFAULTS |
Closed
|
2008-07-22
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1993139 |
Display issue when start and stop position = 0 |
Closed
|
2008-06-13
|
lstein
|
nobody
|
Fixed
|
5
|
|
1957997 |
Add your own tracks bug |
Closed
|
2008-05-05
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1904100 |
Plugin links |
Closed
|
2008-02-28
|
lstein
|
nobody
|
None
|
8
|
|
1871425 |
remote annotation bug |
Closed
|
2008-01-14
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1845217 |
Invalid genbank export: no space after feature name |
Closed
|
2007-12-05
|
scottcain
|
richardmoir
|
Fixed
|
5
|
|
1840407 |
make_das_conf.pl doesn't play well with ensembl |
Open
|
2007-11-28
|
lstein
|
scottcain
|
Later
|
7
|
|
1838821 |
unable to put uploaded features in overview |
Closed
|
2007-11-26
|
lstein
|
scottcain
|
None
|
7
|
|
1831021 |
some minor warnings |
Closed
|
2007-11-13
|
scottcain
|
alpapan
|
Fixed
|
5
|
|
1831018 |
Installation requires a subroutine not present in Bioperl 2. |
Closed
|
2007-11-13
|
scottcain
|
alpapan
|
Invalid
|
5
|
|
1827625 |
Some Plugins incompatible with Bio::DB::SeqFeature::Store |
Closed
|
2007-11-07
|
lstein
|
chrisfields
|
Fixed
|
5
|
|
1824217 |
Repeatable Drag "not an integer" error |
Open
|
2007-11-01
|
mitchskin
|
nobody
|
None
|
5
|
|
1816491 |
java.lang.StackOverflowError when opening regions with lots |
Open
|
2007-10-19
|
gk_fan
|
justaddcoffee
|
None
|
5
|
|
1808662 |
gc window algorithm bugs and speed in dna.pm |
Closed
|
2007-10-06
|
lstein
|
dwrice
|
Accepted
|
5
|
|
1805470 |
gbrowse_img 'add' option causes an error |
Closed
|
2007-10-01
|
lstein
|
nobody
|
Works For Me
|
7
|
|
1792355 |
Caching and ordering of annotator plugin tracks |
Closed
|
2007-09-11
|
lstein
|
pareng
|
Fixed
|
5
|
|
1779753 |
DAS support broken in 1.68 |
Closed
|
2007-08-22
|
lstein
|
lstein
|
Fixed
|
6
|
|
1778554 |
setting GMOD_ROOT on cmd line doesn't work |
Closed
|
2007-08-21
|
scottcain
|
scottcain
|
Rejected
|
7
|
|
1773261 |
Details view: image map links not aligned |
Closed
|
2007-08-13
|
lstein
|
jarvisais
|
Fixed
|
5
|
|
1764838 |
berkeleydb failing to load sequence |
Closed
|
2007-07-31
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1760389 |
link directives stop working when balloon and dragging off |
Closed
|
2007-07-25
|
lstein
|
scottcain
|
None
|
8
|
|
1733036 |
gff3view returns dups for features with > 1 dbxref |
Closed
|
2007-06-07
|
scottcain
|
rbuels
|
Fixed
|
6
|
|
1727226 |
gmod_bulk_load_gff3.pl fails when using match and match_part |
Closed
|
2007-05-29
|
scottcain
|
nobody
|
Fixed
|
5
|
|
1724995 |
Track not opening automatically for found features |
Closed
|
2007-05-24
|
scottcain
|
nobody
|
Fixed
|
5
|
|
1700885 |
bad SQL in GBROWSE/Bio::DB::Das::Chado::Segment::Feature |
Closed
|
2007-04-15
|
scottcain
|
justaddcoffee
|
Fixed
|
5
|
|
1683766 |
Better messages on chado.conf misconfiguration |
Open
|
2007-03-19
|
scottcain
|
briano
|
None
|
5
|
|
1678396 |
Unable to install modified Chado database |
Open
|
2007-03-11
|
scottcain
|
briano
|
None
|
5
|
|
1678360 |
Problem with AutoDBI |
Closed
|
2007-03-11
|
scottcain
|
briano
|
None
|
5
|
|
1672696 |
right hand coordinate of icon off by 1 |
Closed
|
2007-03-02
|
scottcain
|
kchris
|
Invalid
|
5
|
|
1655424 |
Bug when using bulk_load_gff.PLS |
Closed
|
2007-02-08
|
scottcain
|
nobody
|
Invalid
|
5
|
|
1613391 |
warning when gbrowse_details doesn't get sequence |
Closed
|
2006-12-11
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1613389 |
warnings when reset link is pressed |
Closed
|
2006-12-11
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1613388 |
protected links not showing up after authentication |
Closed
|
2006-12-11
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1611263 |
use of $#array notation in conf causes errors |
Closed
|
2006-12-08
|
lstein
|
scottcain
|
Fixed
|
5
|
|
1609429 |
can't call method expire on an undefined value |
Closed
|
2006-12-05
|
scottcain
|
karadolinski
|
Works For Me
|
5
|
|
1598247 |
unreadable .conf causes gbrowse runtime error |
Closed
|
2006-11-17
|
scottcain
|
nobody
|
Fixed
|
5
|
|
1562393 |
DAS2 spec incompleteness |
Open
|
2006-09-20
|
allenday
|
allenday
|
None
|
5
|
|
1553877 |
src and vsrc missing capabilities, etc |
Open
|
2006-09-07
|
boconnor
|
allenday
|
None
|
9
|
|
1551757 |
Assay individual object rendering |
Open
|
2006-09-04
|
boconnor
|
allenday
|
None
|
8
|
|
1551754 |
ontology URI modification |
Open
|
2006-09-04
|
boconnor
|
allenday
|
None
|
7
|
|
1551752 |
xml:base in Assay responses ; Hyrax sync |
Open
|
2006-09-04
|
boconnor
|
allenday
|
None
|
7
|
|
1551750 |
id/uri MAGE-ML changes in Assay docs |
Open
|
2006-09-04
|
allenday
|
allenday
|
None
|
7
|
|
1551749 |
XSL templates |
Open
|
2006-09-04
|
allenday
|
allenday
|
None
|
8
|
