Tracker: Feature Requests


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ID Summary Status Opened Assignee Submitter Priority
ID Summary Status Opened Assignee Submitter Priority
Assignee: Status: Category: Group: Submitter: Keyword: Artifact ID: Permalink
3609541 Replace std::map by std::unordered_map Open 2013-03-30 ben_langmeadProject Admin el_torcedor 5
3604395 Bowtie2 -- make summary output less confusing Open 2013-02-12 ben_langmeadProject Admin gringer 5
3602567 64 Bit Windows x86_64 Build? Closed 2013-01-29 ben_langmeadProject Admin evolvedmicrobe 5
3588593 Slight modification to incorporate methylation data Open 2012-11-19 ben_langmeadProject Admin nobody 5
3585456 Raise error on multiple -x flags Open 2012-11-08 ben_langmeadProject Admin nobody 5
3577334 Alignment position on reads Open 2012-10-15 ben_langmeadProject Admin nobody 5
3576755 bowtie2 QUAL fields in -k or -a mode Open 2012-10-12 ben_langmeadProject Admin https://www.google.com/accounts 5
3572665 Provide/build bowtie2.bat too (WIndows only) Open 2012-09-27 ben_langmeadProject Admin HenrikB 5
3572629 Support for comma-separated filenames Open 2012-09-27 ben_langmeadProject Admin HenrikB 5
3566728 ability to set initial seed placement Open 2012-09-11 ben_langmeadProject Admin nobody 5
3563234 simulate reads from ref. genome Closed 2012-08-30 ben_langmeadProject Admin nobody 5
3553267 bowtie2(beta7) distinguish single and multiple best hits Open 2012-08-01 ben_langmeadProject Admin Kevin Koh 5
3552773 Zebrafish pre-built assembly Open 2012-07-31 ben_langmeadProject Admin nobody 5
3550822 unmatched Open 2012-07-28 ben_langmeadProject Admin nobody 5
3550013 Selectively Mask bases within the fragment of only one of t Open 2012-07-27 ben_langmeadProject Admin paparountas 5
3547745 Hi-C alignment Open 2012-07-23 ben_langmeadProject Admin meyerlab 5
3543594 Read qualities in sam Open 2012-07-13 ben_langmeadProject Admin nobody 5
3543280 File Descriptor Input from Command Line Open 2012-07-12 ben_langmeadProject Admin nobody 5
3534005 bowtie2 - automatically detect FASTQ vs FASTA Open 2012-06-09 ben_langmeadProject Admin Torsten Seemann 5
3527096 bowte2: maxmapped fastq output desired Open 2012-05-15 ben_langmeadProject Admin nobody 5
3527081 bowtie2: NH and IH tags desired Open 2012-05-15 ben_langmeadProject Admin nobody 5
3525139 bowtie2 allow STDIN as input Closed 2012-05-09 ben_langmeadProject Admin nobody 5
3500633 multiple gz file support Closed 2012-03-09 ben_langmeadProject Admin briankn 5
3500628 multiple gz file support Closed 2012-03-09 ben_langmeadProject Admin nobody 5
3500486 include -mapq option Open 2012-03-09 ben_langmeadProject Admin Jenny Chen 5
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