Open Biomedical Ontologies

Tracker: Phenotypic quality (PATO) requests

6 definitions - ID: 1436806
Last Update: Settings changed ( gkoutos )

PATO is lacking definitions

New definitions are woth adding ASAP, but it may be
better to focus
energies on the above issues first (so we don't waste
time defining
terms that will be removed).

My proposal would be for PATO curators to start at the
top of the
hierarchy and work down breadth-first; at the same time
working with
annotators to add definitions for terms as they are
used in new
annotations.

Definitions should as far as possible be specified in
terms of
instances instantiated by the terms. The definitions
should reflect
the is_a hierarchy, which each definition refining its is_a
parent. Providing definitions may be done in concert
with hierarchy
changes, see below

WHEN: phase 2, ongoing. All annotations that used a
term before being
defined should be checked. New annotations should have
definitions for
all terms used. This may slow annotation a little at first.


Chris Mungall ( cmungall ) - 2006-02-22 08:28:00 PST

6

Closed

None

Georgios V. Gkoutos

None

None

Public


Comment ( 1 )

Date: 2006-08-27 11:27:16 PDT
Sender: cmungallProject Admin

Logged In: YES
user_id=254723

see attached file for strawman definition style


Attached File ( 1 )

Filename Description Download
strawman_quality.obo Download

Changes ( 5 )

Field Old Value Date By
status_id Open 2007-03-01 04:25:44 PST gkoutos
close_date - 2007-03-01 04:25:44 PST gkoutos
priority 5 2006-08-27 11:27:16 PDT cmungall
assigned_to nobody 2006-08-27 11:27:16 PDT cmungall
File Added 190880: strawman_quality.obo 2006-08-27 11:27:16 PDT cmungall