Home / SSA (GIllespie Simulator)
Name Modified Size Downloads / Week Status
Parent folder
Totals: 5 Items   7.3 MB 3
SSA-0.3 2008-08-12 22 weekly downloads
SSA-0.2 2006-03-24 11 weekly downloads
xSSAlite-12.01.1-17Jan2012-1301.zip 2012-01-17 3.6 MB 11 weekly downloads
README.txt 2011-03-08 1.1 kB 11 weekly downloads
xSSAlite-1.2.01-08Mar2011-1224.zip 2011-03-08 3.6 MB 11 weekly downloads
README.txt for xSSAlite ======================= xSSA is a Mathematica package that implements Dan Gillespie's Stochastic Simulation Algorithm for biochemical simulations. Reference: Gillespie, J. Phys.Chem 81(25):2340 (1977) Input format is compatible with xCellerator reaction schema, but the package can be used independently of xCellerator. xSSAlite implements all of the mass-action arrows in Cellerator, and does not implement other reactions such as MM, Hill, or GMWC. The older files "SSA" only handle arrows such as A+B->P+Q but cannot deal with the more complex Cellerator arrows, and is not compatible with Cellzilla2D. Download ======== The latest test version is the file xSSA-version-date.zip listed above. Installation ============ There is a mathematica notebook install-xSSAlite.nb in the zip file. Getting Started/Examples ======================== See the html folder of the zip file. Licensing ========= LGPL; See http://creativecommons.org/licenses/LGPL/2.1/ A copy of this license is provided in the files LICENSE.html
Source: README.txt, updated 2011-03-08