vcfhacks

alpha

simple to use commandline programs for VCF filtering and manipulation

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Description

Simple tools to be used on the commandline for performing simple tasks on VCF files. Take the name as a warning, bugs may exist.

vcfhacks Web Site

Features

  • filter SNPs on minor allele frequency or SNP build
  • filter on EVS minor allele frequency
  • filter on samples
  • find biallelic (compound het or homozygous) variants in one or more samples
  • find de novo variants
  • annotate gene information to VEP output

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Additional Project Details

Programming Language

Perl

Registered

2013-11-18
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