Simple tools to be used on the commandline for performing simple tasks on VCF files. Take the name as a warning, bugs may exist.
- filter SNPs on minor allele frequency or SNP build
- filter on EVS minor allele frequency
- filter on samples
- find biallelic (compound het or homozygous) variants in one or more samples
- find de novo variants
- annotate gene information to VEP output
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