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T-lex

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Transposable Element annotation using Next-Generation Sequencing data

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Description

The T-lex package contains two pipelines. The T-lex pipeline calls presence/absence of known TE insertions using re-sequencing data. On top of the genotyping, this pipeline also allows to re-annotate TEs and discover traces of transposition events called Target Site Duplication (TSD).
The other T-lex pipeline discovers and annotates de novo TE insertions.

http://petrov.stanford.edu/cgi-bin/Tlex.html

T-lex Web Site

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Additional Project Details

Languages

English

Intended Audience

Education, Science/Research

User Interface

Non-interactive (Daemon)

Programming Language

Perl

Registered

2012-08-14
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