Timina is a Java web-based application for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.
Features:
- submission of sequenced strings
- assembly of submitted sequences
- automatic annotation of assembled sequences
- manual annotation of automatic annotated sequences
- many reports of submission, assembly and annotation
- access control with user rights
- can be installed in low-end servers
- textual search of annotations
- execution of blast over the assembled sequences
- high extensible by plug-in and tools interfaces
Release Date:
Topic:
Operating System:
License:
Translations:
Intended Audience:
User Interface:
Programming Language:
Registered:
Ratings and Reviews
Be the first to post a text review of Timina. Rate and review a project by clicking thumbs up or thumbs down in the right column.
Project Feed
-
Project Information Updated
-
Code committed
-
Code committed
-
Project Information Updated
-
Code committed
-
Timina 0.12.1: bug fixing
Timina 0.12.1: fixes some bugs found in the previous version. Fixes bugs: [ 2777751 ] - Error in automatic annotation if no plugins defined [ 2770823 ] - Annotation summary page shows inappropriate options [ 2731676 ] - HTML in assembly execution log is truncated [ 1919694 ] - Database is not cleaned if an automatic annotation fails For more information about Timina see http://timina.sourceforge.net .
-
File released: /timina/Timina 0.12.1/Timina-0.12.1.zip
-
timina Timina 0.12.1 file released: Timina-0.12.1.zip
Fixes bugs: [ 2777751 ] - Error in automatic annotation if no plugins defined [ 2770823 ] - Annotation summary page shows inappropriate options [ 2731676 ] - HTML in assembly execution log is truncated [ 1919694 ] - Database is not cleaned if an automatic annotation fails
-
timina Timina 0.12.1 file released: Timina-0.12.1.zip
Fixes bugs: [ 2777751 ] - Error in automatic annotation if no plugins defined [ 2770823 ] - Annotation summary page shows inappropriate options [ 2731676 ] - HTML in assembly execution log is truncated [ 1919694 ] - Database is not cleaned if an automatic annotation fails
-
Code committed
Rate and Review
Be the first person to add a text review.
Related Projects
-
ABACAS
Algorithm Based Automatic Contiguation of Assembled sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
-
ANEXdb
ANEXdb is a web application built on a MySQL database to handle both microarray expression data and sequence assembly and annotation data.
-
Timina Actions
About SourceForge
Develop Software
Community
Copyright © 2010 Geeknet, Inc. All rights reserved. Terms of Use
