An implementation of the smith-waterman algorithm on the cell broadband engine.
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File released: /swcbe/swcbe-1.1/swcbe-1.1.tar.gz
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smith-waterman on cell broadband engine
swcbe-1.0 has been released, an implementation of the smith-waterman algorithm on the cell broadband engine (PS3). Handles arbitrary length databases, with queries limited to (32767-og)/eg, where og is the open-gap penalty, and eg is the extend-gap penalty. http://swcbe.sf.net
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swcbe swcbe-1.1 file released: swcbe-1.1.tar.gz
changed README to instruct user to edit #define NUM_SPE 6 for the number of spes on their platform
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