SWAPHI: Smith-Waterman on Intel Xeon Phi

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the first Smith-Waterman sequence alignment on Xeon Phi coprocessors

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Description

SWAPHI is the first parallel algorithm to accelerate the Smith-Waterman protein database search on Intel Xeon Phi coprocessors. By searching against the UniProtKB/TrEMBL database, SWAPHI achieves a performance of up to 58.8 billion cell updates per second (GCUPS) on a single coprocessor and up to 228.4 GCUPS on four coprocessors.

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Additional Project Details

Intended Audience

Education, Engineering, Science/Research

User Interface

Console/Terminal

Programming Language

C++

Registered

2013-08-10
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