The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host.
License
GNU General Public License version 2.0 (GPLv2), Apache License V2.0Follow SWAPHI-LS: Alignment on Xeon Phi Cluster
Other Useful Business Software
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of SWAPHI-LS: Alignment on Xeon Phi Cluster!