SNPTools

5.0 Stars (2)
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BSD Linux

Description

SNPTools is a suite of tools that enables integrative SNP analysis in next generation sequencing data with large cohorts. It not only calls SNP in a population with high sensitivity and accuracy, but also employs a novel imputation engine to achieve highly accurate genotype calling and phasing in an efficient way.

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User Reviews

  • melaniejensen
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Thanks for Snptools, it's excellent!

    Posted 06/26/2013
  • mikenight
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Hey. My output of pileup are C2.sorted.bam.edb and C6.sorted.bam.edb The version of reference is Saccharomyces cerevisiae EF4.66 The list file is /home/bo/program/snptools/C2.sorted.bam.ebd /home/bo/program/snptools/C6.sorted.bam.ebd The command line about varisite is ./varisite list.txt chr /media/6729f29b-428d-4980-9c8a-eb9613fc2cfb/yeast-linux-reference.fa The fault information is binding 2 groups 1 loading /media/6729f29b-428d-4980-9c8a-eb9613fc2cfb/yeast-linux-reference.fa fail to read /home/bo/program/snptools/C2.sorted.bam.ebd fail to read /home/bo/program/snptools/C6.sorted.bam.ebd Segmentation fault

    Posted 03/21/2013
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Additional Project Details

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

C++

Registered

2011-03-29
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