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• Snagger: Version 1.09 Release Available

  Add-on to Haploview that picks tagSNPs while allowing for: (1) preferential selection based on user-defined criteria, (2) selection across multiple populations, (3) selection outside defined genomic regions, and (4) picking of surrogate (backup) tagSNPs. Version 1.09 of the source code and executable JAR file are now available. This is a critical update which fixes a couple of bugs. Please see the change log for details.

  posted by chrisedlund 315 days ago

• File released: /snagger/Haploview with Snagger 1.09 Release/ExampleData_v1.09.tar

  posted 315 days ago

• File released: /snagger/Haploview with Snagger 1.09 Release/HaploviewWithSnagger_v1.09.tar.gz

  posted 315 days ago

• File released: /snagger/Haploview with Snagger 1.09 Release/SnaggerUserGuide_v1.09.pdf

  posted 315 days ago

• File released: /snagger/Haploview with Snagger 1.09 Release/HaploviewWithSnagger_v1.09.jar

  posted 315 days ago

• snagger Haploview with Snagger 1.09 Release file released: SnaggerUserGuide_v1.09.pdf

  v1.09 Changes -Fixed bug where SNPs marked as "Potential_Tag_No_Capture" in the scorefile are still captured if the score file contains an "Original_Name" column, the text in the "SNP_Name" column is different than the "Original_Name" column, the command line is used, and only one population is being tagged. -Fixed bug where SNPs that are force included using the score file's "Force_Include" column and do not pass the "Check Markers" filters are not included in the Snagger tab, when using the GUI version of the program. -Removed platform option in Advanced Snagger Options window, since it did not affect functionality.

  posted 315 days ago

• snagger Haploview with Snagger 1.09 Release file released: HaploviewWithSnagger_v1.09.tar.gz

  v1.09 Changes -Fixed bug where SNPs marked as "Potential_Tag_No_Capture" in the scorefile are still captured if the score file contains an "Original_Name" column, the text in the "SNP_Name" column is different than the "Original_Name" column, the command line is used, and only one population is being tagged. -Fixed bug where SNPs that are force included using the score file's "Force_Include" column and do not pass the "Check Markers" filters are not included in the Snagger tab, when using the GUI version of the program. -Removed platform option in Advanced Snagger Options window, since it did not affect functionality.

  posted 315 days ago

• snagger Haploview with Snagger 1.09 Release file released: HaploviewWithSnagger_v1.09.jar

  v1.09 Changes -Fixed bug where SNPs marked as "Potential_Tag_No_Capture" in the scorefile are still captured if the score file contains an "Original_Name" column, the text in the "SNP_Name" column is different than the "Original_Name" column, the command line is used, and only one population is being tagged. -Fixed bug where SNPs that are force included using the score file's "Force_Include" column and do not pass the "Check Markers" filters are not included in the Snagger tab, when using the GUI version of the program. -Removed platform option in Advanced Snagger Options window, since it did not affect functionality.

  posted 315 days ago

• snagger Haploview with Snagger 1.09 Release file released: ExampleData_v1.09.tar

  v1.09 Changes -Fixed bug where SNPs marked as "Potential_Tag_No_Capture" in the scorefile are still captured if the score file contains an "Original_Name" column, the text in the "SNP_Name" column is different than the "Original_Name" column, the command line is used, and only one population is being tagged. -Fixed bug where SNPs that are force included using the score file's "Force_Include" column and do not pass the "Check Markers" filters are not included in the Snagger tab, when using the GUI version of the program. -Removed platform option in Advanced Snagger Options window, since it did not affect functionality.

  posted 315 days ago

• File released: /snagger/Haploview with Snagger 1.08 Release/ExampleData_v1.08.tar

  posted 582 days ago