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SIBsim4: an extensive rewrite of the sim4 program to improve execution speed and provide more informative output. Written in C, mainly targeted at Linux and Unix.Keywords: bioinformatics, genome, transcriptome, EST, splicing, exon, intron.


http://sibsim4.sourceforge.net





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Release Date:

2008-05-06

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Programming Language:

C

Registered:

2004-04-20

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  • Code committed

    c4chris committed patchset 180 of module SIBsim4 to the SIBsim4 CVS repository, changing 4 files

    posted by c4chris 73 days ago

  • Tracker comment added

    posted by c4chris 167 days ago

  • Tracker comment added

    posted by mmokrejs 167 days ago

  • Tracker comment added

    posted by c4chris 167 days ago

  • Tracker artifact added

    posted by mmokrejs 206 days ago

  • Code committed

    c4chris committed patchset 23 of module htdocs to the SIBsim4 CVS repository, changing 1 files

    posted by c4chris 211 days ago

  • sibsim4 0.17 file released: SIBsim4-0.17-1.src.rpm

    2008-04-16 16:32 c4chris * sim4.init.c: Bump version number to 0.17. 2008-04-16 16:32 c4chris * SIBsim4.1: Add -H option. 2008-04-01 00:58 c4chris * align.c, sim4.h, sim4.init.c, sim4b1.c, sim4b1.h: Fix gcc 4.3 conversion warnings. 2008-03-31 00:58 c4chris * Makefile, sim4.h, sim4.init.c, sim4b1.c: Add -Wconversion and cleanup warnings. 2008-03-29 18:23 c4chris * sim4.h, sim4.init.c, sim4b1.c: Use percentage for -H chimera option. 2008-03-29 16:43 c4chris * sim4.init.c, sim4b1.c: Do chimera hunting in parallel with normal processing, and keep best result. 2008-03-29 02:26 c4chris * align.c, align.h, sim4.h, sim4.init.c, sim4b1.c: Implement chimera hunter.

    posted 554 days ago

  • File released: /sibsim4/0.17/SIBsim4-0.17-1.src.rpm

    posted 554 days ago

  • sibsim4 0.17 file released: SIBsim4-0.17.tar.gz

    2008-04-16 16:32 c4chris * sim4.init.c: Bump version number to 0.17. 2008-04-16 16:32 c4chris * SIBsim4.1: Add -H option. 2008-04-01 00:58 c4chris * align.c, sim4.h, sim4.init.c, sim4b1.c, sim4b1.h: Fix gcc 4.3 conversion warnings. 2008-03-31 00:58 c4chris * Makefile, sim4.h, sim4.init.c, sim4b1.c: Add -Wconversion and cleanup warnings. 2008-03-29 18:23 c4chris * sim4.h, sim4.init.c, sim4b1.c: Use percentage for -H chimera option. 2008-03-29 16:43 c4chris * sim4.init.c, sim4b1.c: Do chimera hunting in parallel with normal processing, and keep best result. 2008-03-29 02:26 c4chris * align.c, align.h, sim4.h, sim4.init.c, sim4b1.c: Implement chimera hunter.

    posted 555 days ago

  • Code committed

    c4chris committed patchset 22 of module htdocs to the SIBsim4 CVS repository, changing 3 files

    posted by c4chris 555 days ago

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