SAT-Assembler

alpha

a scalable and accurate targeted gene assembly tool.

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Description

SAT-Assembler can perform targeted gene assembly for both RNA-Seq and metagenomic data. It addresses the above challenges of de novo assembly of large scale NGS data by conducting family-specic gene assembly, homology-guided overlap graph construction, and careful graph traversal. Compared with existing assembly tools SAT-Assembler has smaller memory usage, better gene coverage, and lower chimera rate.

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Additional Project Details

Intended Audience

Information Technology

Programming Language

Python

Registered

2013-10-14
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